Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1743.0 857 100.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1714.9 857 98.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1468.8 857 82.1
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1455.3 858 81.8
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1453.7 857 81.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1451.0 858 81.2
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1441.0 857 79.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1437.9 857 80.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1422.1 857 79.3
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1416.4 857 79.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1400.2 857 78.5
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1378.2 858 77.3
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1353.2 859 76.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1352.8 857 76.0
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1300.0 858 73.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1280.4 853 71.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1264.2 855 71.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 887 70.5
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1259.2 755 78.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1257.3 853 70.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1256.5 853 70.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1249.6 853 69.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 858 68.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 859 68.2
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1231.1 858 68.6
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1230.7 853 69.3
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 857 68.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 858 68.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1224.9 856 67.5
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 855 67.7
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1222.6 853 68.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 853 67.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1217.6 857 67.6
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 853 68.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1213.7 855 68.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1209.9 855 68.2
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 853 67.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 853 67.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 853 67.2
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 854 67.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1203.3 853 67.3
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1199.5 858 66.8
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 864 66.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1191.8 858 66.4
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1187.6 863 66.6
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1187.2 854 67.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1185.6 853 66.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1185.6 891 65.4
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 872 65.9
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1176.0 853 65.8
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 975 60.7
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 882 65.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 853 67.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 814 68.7
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1167.9 858 66.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 813 69.6
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 827 67.8
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1152.5 856 64.4
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1146.3 808 67.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1145.6 852 65.7
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1142.1 859 64.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 859 63.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1135.6 865 63.9
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1132.5 857 64.2
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 860 63.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 855 62.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 865 63.2
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 855 63.2
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 854 63.1
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 881 62.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 857 62.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 853 62.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 855 62.1
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1104.7 861 61.8
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 853 63.1
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1099.0 862 61.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 889 59.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1084.3 860 61.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 856 61.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1082.0 861 61.0
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 859 60.5
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 853 61.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 859 60.9
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 854 61.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.5e-310 1067.8 895 59.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 6.4e-309 1063.9 876 59.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.4e-308 1062.8 874 59.5
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 3.5e-307 1058.1 815 61.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.3e-306 1055.4 860 59.9
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.5e-305 1052.0 862 59.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.3e-305 1051.2 779 64.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.1e-303 1046.6 729 68.0
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 3.8e-301 1038.1 855 60.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 780 62.1
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.0e-298 1030.0 780 64.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.3e-298 1029.6 841 59.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.1e-296 1022.3 791 60.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 8.1e-296 1020.4 773 61.7
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.4e-295 1018.8 720 67.1
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.5e-294 1014.6 769 61.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-293 1011.5 773 60.9
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.1e-292 1010.0 772 60.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.2e-292 1008.1 775 59.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 9.3e-292 1006.9 798 58.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.6e-291 1004.6 806 59.4
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 6.0e-291 1004.2 783 59.9
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.5e-289 998.8 785 59.9
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.5e-289 998.8 861 57.8
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 6.2e-288 994.2 856 57.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-286 989.9 854 57.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.9e-285 984.6 867 55.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.6e-283 978.0 850 57.1
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.3e-282 976.5 909 53.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 5.1e-282 974.5 775 59.6
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 4.6e-275 951.4 734 60.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 8.8e-266 920.6 808 56.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 6.3e-264 914.4 862 54.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.5e-254 883.2 857 52.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 5.0e-245 851.7 823 50.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-244 849.0 783 53.0
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 4.4e-241 838.6 653 62.6
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 9.4e-236 820.8 803 51.9
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.0e-234 815.5 862 47.2
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 5.4e-231 805.1 601 66.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.5e-228 795.0 788 50.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-225 787.3 438 82.6
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.7e-222 776.2 629 61.0
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.8e-210 736.9 463 76.5
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.3e-210 736.5 523 68.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.1e-207 724.9 471 70.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 9.9e-201 704.5 659 54.2
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-200 703.7 778 47.0
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.9e-200 703.0 432 74.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.6e-198 695.7 665 50.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 3.9e-197 692.6 432 75.7
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-175 620.9 672 50.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 7.9e-174 615.1 408 74.3
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.5e-169 599.4 868 39.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.7e-165 585.5 539 53.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 8.7e-157 558.5 324 79.0
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 6.7e-149 532.3 572 50.5
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.4e-135 485.3 780 39.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 7.0e-130 469.2 271 79.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 3.7e-123 446.8 435 54.9
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.9e-112 410.6 334 59.3
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.9e-104 383.6 409 51.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 6.6e-104 382.9 391 52.9
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.6e-100 370.9 399 51.4
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.5e-87 327.8 243 63.0
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.8e-75 287.3 527 32.8
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.1e-73 281.6 827 28.4
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.3e-71 273.1 167 73.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 9.9e-68 262.7 202 61.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.4e-58 232.3 215 54.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.6e-52 211.5 139 69.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.6e-46 192.2 109 77.1
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.6e-41 175.6 193 47.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.7e-41 174.9 100 78.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.3e-30 139.4 198 39.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.5e-28 131.0 82 70.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.5e-27 127.1 88 70.5
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.2e-25 122.9 96 61.5
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.7e-22 112.5 69 75.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.6e-20 105.1 84 58.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.9e-19 101.7 138 42.0
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.1e-18 99.8 95 55.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.7e-17 95.1 61 72.1
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.6e-15 88.6 77 53.2
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.3e-14 86.3 59 72.9
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 6.3e-14 84.0 69 66.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.1e-13 81.6 62 61.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-12 78.6 96 43.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.5e-12 78.2 94 44.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 7.7e-12 77.0 43 76.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.3e-11 76.3 46 78.3
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.5e-11 73.9 40 80.0


User provided reference genes

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