Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 8.1e-112 407.9 363 100.0
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.1e-35 154.1 320 71.2
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.0e-26 123.6 362 53.9
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.2e-22 111.7 325 69.2
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 7.8e-22 109.0 56 96.4
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-21 108.6 56 94.6
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.7e-13 81.3 59 67.8
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 8.6e-13 79.0 56 67.9
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 8.6e-13 79.0 56 67.9
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 8.6e-13 79.0 56 69.6
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.1e-12 78.6 56 64.3
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.1e-12 78.6 56 66.1
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.5e-12 78.2 55 67.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.5e-12 78.2 52 71.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 1.9e-12 77.8 56 66.1
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.9e-12 77.8 54 66.7
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.9e-12 77.8 56 67.9
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.5e-12 77.4 56 64.3
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.5e-12 77.4 54 63.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 3.3e-12 77.0 56 66.1
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 3.3e-12 77.0 56 66.1
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 3.3e-12 77.0 56 64.3
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.3e-12 77.0 59 64.4
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 4.3e-12 76.6 54 59.3
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 4.3e-12 76.6 56 64.3
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 4.3e-12 76.6 55 67.3
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 5.6e-12 76.3 56 67.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 5.6e-12 76.3 56 67.9
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 7.3e-12 75.9 55 65.5
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.3e-12 75.9 55 65.5
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 7.3e-12 75.9 60 58.3
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 9.5e-12 75.5 54 63.0
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 9.5e-12 75.5 67 56.7
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.2e-11 75.1 56 64.3
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.2e-11 75.1 53 66.0
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 1.2e-11 75.1 54 72.2
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.6e-11 74.7 60 66.7
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.6e-11 74.7 55 63.6
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.6e-11 74.7 57 63.2
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.6e-11 74.7 55 63.6
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.1e-11 74.3 56 62.5
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.1e-11 74.3 55 65.5
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 2.1e-11 74.3 56 62.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.1e-11 74.3 56 62.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.1e-11 74.3 54 68.5
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 2.1e-11 74.3 54 68.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.1e-11 74.3 61 62.3
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 2.1e-11 74.3 53 69.8
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.8e-11 73.9 58 63.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.8e-11 73.9 57 61.4
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.8e-11 73.9 54 63.0
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 4.7e-11 73.2 56 66.1
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 4.7e-11 73.2 58 63.8
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.2e-11 72.8 57 63.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 6.2e-11 72.8 54 63.0
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 6.2e-11 72.8 55 65.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.2e-11 72.8 55 61.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 8.0e-11 72.4 54 66.7
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.1e-10 72.0 56 60.7
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.4e-10 71.6 57 63.2
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.4e-10 71.6 59 61.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.4e-10 71.6 55 65.5
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.4e-10 71.6 55 65.5
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.8e-10 71.2 36 94.4
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.8e-10 71.2 63 57.1
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.1e-10 70.5 55 63.6
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 4.0e-10 70.1 55 61.8
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.0e-10 70.1 54 64.8
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 6.8e-10 69.3 55 63.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.9e-10 68.9 65 58.5
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.2e-09 68.6 52 65.4
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.5e-09 68.2 58 60.3
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.5e-09 68.2 55 60.0
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 2.0e-09 67.8 57 59.6
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 2.0e-09 67.8 51 58.8
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.6e-09 67.4 55 58.2
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 3.4e-09 67.0 54 63.0
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 7.5e-09 65.9 57 56.1
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.3e-08 65.1 58 56.9
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.7e-08 64.7 36 83.3
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.9e-08 63.9 58 55.2
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.9e-08 63.9 58 50.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 2.9e-08 63.9 58 53.4
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 3.7e-08 63.5 58 60.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 4.9e-08 63.2 58 55.2
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.9e-08 63.2 35 85.7
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 6.4e-08 62.8 58 53.4
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 6.4e-08 62.8 53 58.5
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 8.3e-08 62.4 48 62.5
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 8.3e-08 62.4 64 50.0
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 8.3e-08 62.4 55 56.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.4e-07 60.8 58 51.7
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 2.4e-07 60.8 58 51.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 2.4e-07 60.8 58 51.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.4e-07 60.8 58 51.7
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.4e-07 60.8 36 83.3
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 3.2e-07 60.5 51 60.8
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 4.1e-07 60.1 61 44.3
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 5.4e-07 59.7 58 50.0
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 5.4e-07 59.7 58 50.0
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.0e-07 59.3 57 56.1
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.0e-07 59.3 35 80.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.0e-07 59.3 35 80.0
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 9.2e-07 58.9 86 32.6
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.6e-06 58.2 36 80.6
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 3.5e-06 57.0 38 68.4
TPR.G24441 Trifolium pratense HOM05D007098 ORTHO05D008793 3.5e-06 57.0 38 76.3
TWI75G1584 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 3.5e-06 57.0 87 33.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 7.8e-06 55.8 33 81.8


User provided reference genes

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