Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 2.9e-224 781.6 385 100.0
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 9.2e-215 750.0 392 95.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.8e-125 453.4 412 59.7
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.8e-123 446.0 412 59.0
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.6e-118 429.1 410 57.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.0e-117 427.6 410 57.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.4e-116 422.2 396 56.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.8e-116 421.0 426 56.1
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.7e-115 419.1 423 54.6
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.1e-114 416.0 423 56.7
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.3e-111 406.0 405 55.8
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.1e-110 403.3 389 55.3
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.4e-107 391.7 392 56.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.6e-105 387.1 435 52.9
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 2.7e-105 386.3 413 54.0
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 7.8e-105 384.8 415 53.7
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.6e-102 377.1 425 51.8
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.8e-102 376.3 400 52.0
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.1e-101 374.4 417 51.1
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 5.2e-101 372.1 275 66.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.2e-100 370.9 411 51.3
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.8e-100 368.6 404 51.0
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 7.5e-100 368.2 404 50.7
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 7.5e-100 368.2 300 64.0
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-99 367.1 405 50.4
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.9e-99 365.5 406 50.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.3e-99 364.8 404 50.5
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.4e-98 364.0 404 50.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.4e-98 363.2 395 51.9
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.4e-98 363.2 399 51.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 4.1e-98 362.5 404 50.0
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 5.4e-98 362.1 399 51.4
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-97 360.9 402 50.2
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.0e-97 360.1 419 49.4
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-97 359.8 405 49.6
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.5e-97 359.4 406 49.5
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.3e-96 356.7 387 50.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.3e-95 352.8 419 48.4
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.3e-95 351.7 375 50.9
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.6e-94 349.4 394 50.3
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.1e-94 348.2 397 49.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.8e-93 347.1 473 44.4
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.3e-93 346.7 416 47.6
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.3e-93 346.7 381 48.6
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.6e-92 343.2 379 49.1
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.4e-92 342.8 379 51.2
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 5.8e-92 342.0 379 49.1
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 9.9e-92 341.3 415 48.2
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 2.9e-91 339.7 396 48.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.1e-90 335.9 427 47.3
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.2e-89 334.3 431 47.3
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.1e-89 333.6 362 50.0
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 6.0e-89 332.0 398 47.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.7e-88 330.5 388 50.3
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 3.0e-88 329.7 398 47.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 3.0e-88 329.7 378 48.9
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.5e-87 326.6 388 50.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.5e-87 326.6 418 45.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 3.3e-87 326.2 392 47.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 4.3e-87 325.9 383 49.1
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-86 323.9 390 47.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 3.6e-86 322.8 379 47.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.7e-86 322.4 276 58.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.1e-85 319.7 396 46.7
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 2.0e-84 317.0 361 47.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 3.4e-84 316.2 256 62.1
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 5.8e-84 315.5 396 46.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 5.8e-84 315.5 396 46.0
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 7.6e-84 315.1 402 47.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.7e-83 313.9 376 47.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.9e-83 313.2 370 50.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.8e-83 312.8 397 46.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 4.9e-83 312.4 388 45.9
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 8.4e-83 311.6 468 42.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.1e-82 311.2 410 45.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.4e-82 310.8 289 54.0
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 5.4e-82 308.9 385 47.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-81 307.8 383 47.8
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.6e-81 307.4 437 42.8
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.1e-81 307.0 382 46.6
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.5e-81 306.2 395 45.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.5e-81 306.2 395 45.3
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 6.0e-81 305.4 403 42.9
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.3e-80 303.5 369 45.3
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 6.6e-80 302.0 325 51.1
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 7.3e-79 298.5 384 45.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 7.3e-79 298.5 349 47.9
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.2e-78 297.7 378 44.7
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.6e-78 296.2 362 45.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 5.2e-77 292.4 386 44.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.0e-76 290.4 414 42.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.6e-76 290.0 382 45.8
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 9.9e-76 288.1 416 42.3
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.3e-75 287.7 394 43.4
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.4e-74 282.3 414 40.3
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.4e-74 282.3 421 39.9
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.7e-73 280.0 361 44.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 4.6e-73 279.3 428 41.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 6.0e-73 278.9 385 44.2
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 7.8e-73 278.5 387 42.6
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-72 277.7 339 45.7
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.0e-72 276.6 241 57.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.1e-72 275.8 243 57.2
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 8.7e-72 275.0 420 39.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.1e-71 274.6 233 57.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.5e-71 274.2 243 57.2
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.5e-71 274.2 243 57.2
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 6.9e-69 265.4 429 40.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.7e-67 260.8 405 40.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 3.0e-64 250.0 397 37.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 3.1e-61 240.0 275 45.5
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 4.2e-58 229.6 273 46.9
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.9e-55 220.7 305 43.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 3.3e-55 219.9 354 39.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.2e-54 215.7 237 45.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 7.6e-52 208.8 167 60.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 6.0e-49 199.1 205 53.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-47 194.9 286 41.3
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 7.4e-47 192.2 313 38.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.2e-46 190.7 184 52.2
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-45 188.0 255 42.7
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.4e-45 187.2 294 39.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.8e-43 179.9 229 41.9
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 7.2e-42 175.6 285 37.5
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.8e-40 171.0 140 60.7
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 3.9e-40 169.9 236 44.5
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 6.7e-40 169.1 137 60.6
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 8.8e-40 168.7 256 38.3
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.7e-39 165.2 126 64.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 5.3e-37 159.5 210 43.8
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.1e-34 151.8 245 36.7
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.3e-32 144.1 225 37.3
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 6.3e-30 136.0 181 46.4
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.0e-28 131.0 111 58.6
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.5e-28 129.8 98 63.3
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-26 124.8 101 61.4
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.9e-26 124.4 192 43.2
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.6e-25 121.3 184 39.7
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-24 117.9 69 75.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-22 111.7 184 38.0
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 9.1e-21 105.5 95 50.5
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 5.0e-19 99.8 77 61.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 6.5e-19 99.4 211 31.3
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.2e-17 95.1 65 67.7
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-17 95.1 63 60.3
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.0e-16 92.0 55 67.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.4e-16 91.7 173 34.1
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.0e-16 90.1 58 62.1
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-14 84.7 180 31.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.5e-12 77.0 94 43.6
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-10 71.6 48 58.3
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-09 68.2 160 33.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.0e-08 65.5 42 57.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 2.3e-08 64.3 216 26.9
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.2e-08 63.2 48 56.2
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-07 62.0 48 54.2
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.7e-07 59.7 78 42.3


User provided reference genes

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