Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 2213.0 1107 100.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 2034.6 1107 93.6
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1781.9 1076 85.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1762.3 1076 84.1
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1751.1 1077 83.5
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1745.7 1077 82.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1743.4 1077 83.4
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1734.5 1093 82.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1716.0 1076 82.1
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1696.8 1023 85.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 1078 80.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1681.8 1077 79.4
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 1078 79.4
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1674.1 1077 79.1
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 1073 79.4
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 1076 78.9
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 1077 78.5
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 1077 78.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 1077 78.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1658.3 1077 78.3
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1657.5 1078 78.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 1077 78.4
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 1078 78.5
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1654.8 1077 78.0
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1653.6 1078 78.7
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1652.9 1077 78.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1650.6 1077 78.6
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1648.3 1077 78.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 1077 78.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1645.2 1077 77.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1643.2 1077 77.9
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1640.9 1078 77.8
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 1077 77.4
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1638.6 1086 77.5
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 1073 78.3
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1635.2 1077 77.5
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 1078 77.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1625.9 1077 77.0
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1625.5 1077 76.9
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 1108 75.7
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1619.8 1077 77.6
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 1077 76.1
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1613.6 1077 75.6
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1611.7 1077 75.4
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1608.6 1172 71.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 1084 75.3
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 1074 76.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 1079 75.0
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1604.0 1077 75.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1602.8 1078 75.5
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1602.8 1080 75.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 1077 75.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1599.7 1071 76.0
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 1077 75.2
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 1078 76.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 1096 74.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1597.0 1077 75.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1597.0 1077 75.6
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1593.2 1079 74.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1592.4 1073 75.2
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 1080 74.6
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 1073 74.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 1081 74.4
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1587.4 1080 74.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 1077 74.5
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1582.8 1077 74.6
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1582.4 1077 74.9
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1581.2 1079 75.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1578.5 1078 75.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1569.3 1075 74.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1568.5 1063 75.2
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1567.7 1079 74.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1565.4 1077 75.0
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 1077 75.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1558.9 1077 74.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1551.6 1075 74.2
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1548.9 1115 71.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1548.5 1052 76.0
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1544.3 1077 74.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1543.1 1079 73.7
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1542.7 1076 73.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1532.7 1089 73.3
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1516.5 1076 73.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1514.6 1074 72.6
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1501.5 1023 74.7
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1489.9 1068 70.6
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1466.8 1014 75.1
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1448.7 1081 70.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1446.0 1077 70.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1420.2 972 74.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1401.7 931 76.4
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1398.3 1067 67.6
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1357.4 1079 65.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1335.1 905 76.7
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1325.8 872 77.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1299.6 880 76.2
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1296.2 940 71.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1294.6 871 76.5
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1280.4 1083 64.9
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1273.1 881 74.6
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1268.8 1039 64.2
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1265.0 826 78.8
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1263.4 843 79.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1248.8 861 75.4
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1208.7 827 75.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1150.2 1073 56.7
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1142.9 1068 56.1
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1101.3 825 70.8
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 9.5e-289 997.3 667 76.9
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.8e-287 993.0 1070 49.0
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-284 983.8 635 77.5
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 4.1e-276 955.3 728 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 7.1e-276 954.5 875 56.6
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.3e-273 945.7 622 78.9
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.0e-262 909.8 543 85.8
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 3.3e-249 865.9 635 68.2
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.7e-248 862.4 598 73.1
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 5.7e-233 812.0 581 73.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 1.4e-215 754.2 442 85.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 2.1e-163 580.9 360 80.3
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.9e-151 541.2 339 80.5
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.8e-136 490.3 344 73.8
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 6.9e-122 443.0 1130 30.6
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-112 412.1 311 70.1
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.1e-108 399.1 229 82.5
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.9e-104 384.4 229 78.6
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 5.7e-100 370.2 1073 27.6
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 7.4e-100 369.8 213 83.1
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 3.1e-98 364.4 286 67.8
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.2e-96 358.2 207 83.1
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 3.2e-95 354.4 1327 25.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.1e-94 350.1 196 86.7
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 4.8e-91 340.5 229 72.1
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.2e-83 315.1 178 83.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.6e-76 291.6 291 54.0
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.6e-71 273.9 209 67.9
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.0e-69 269.6 153 83.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 5.9e-65 253.8 464 36.2
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.9e-63 248.8 127 92.1
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.6e-60 238.4 152 76.3
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 5.1e-48 197.6 137 68.6
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.4e-42 179.5 161 60.9
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 5.4e-42 177.6 124 71.8
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-41 175.3 174 60.3
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.6e-38 164.9 102 78.4
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.6e-38 164.9 129 65.1
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.2e-34 151.4 94 76.6
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-30 139.8 84 81.0
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-30 139.0 73 93.2
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-27 129.8 81 74.1
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-27 129.0 131 58.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.2e-27 129.0 138 55.1
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.1e-26 124.0 102 63.7
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.0e-24 120.2 76 76.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-23 115.5 75 78.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.6e-23 114.4 92 66.3
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.6e-23 113.6 91 67.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-22 112.1 80 78.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 4.9e-19 101.3 52 88.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.2e-18 98.6 111 45.9
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 4.2e-18 98.2 100 57.0
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 4.2e-18 98.2 88 54.5
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.3e-15 88.6 54 77.8
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.2e-12 80.1 160 35.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 4.5e-12 78.2 227 26.9
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.8e-11 75.1 47 63.8
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 8.7e-08 63.9 50 62.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 8.2e-06 57.4 47 66.0


User provided reference genes

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