Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 7.7e-93 344.0 196 100.0
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.3e-91 338.6 196 98.5
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.8e-57 224.6 198 64.6
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 5.8e-56 221.5 199 67.3
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 7.6e-56 221.1 202 64.4
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.7e-55 219.9 199 64.8
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.9e-54 216.5 196 64.3
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.2e-53 213.8 198 64.1
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 2.3e-52 209.5 198 64.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 2.5e-51 206.1 199 68.8
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 6.4e-47 191.4 197 62.4
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.3e-39 167.2 179 57.5
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.9e-38 163.3 124 72.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.2e-37 160.6 138 65.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 5.1e-36 155.2 138 61.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.5e-35 153.7 158 57.0
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.1e-34 149.8 176 52.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.8e-33 146.7 192 49.0
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.0e-33 145.6 197 49.2
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.0e-33 145.6 134 61.9
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.9e-33 144.8 183 50.8
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.5e-32 143.7 97 76.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.5e-32 143.7 98 78.6
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.0e-32 143.3 137 62.0
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.0e-32 143.3 137 62.0
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.6e-32 141.4 135 63.0
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 9.9e-32 141.0 98 77.6
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.9e-31 139.4 97 75.3
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 2.9e-31 139.4 193 50.8
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.8e-31 139.0 98 77.6
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 8.4e-31 137.9 98 76.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.5e-30 135.2 154 59.7
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.6e-29 133.7 98 70.4
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.6e-29 133.7 98 70.4
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.1e-29 133.3 98 71.4
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.5e-29 132.5 133 57.1
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.9e-29 131.3 184 49.5
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.9e-28 129.0 99 72.7
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 6.7e-28 128.3 87 78.2
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.6e-27 125.2 182 50.5
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.8e-26 122.9 186 48.9
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.1e-25 120.9 165 47.9
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.4e-25 119.8 100 65.0
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.1e-25 119.4 176 49.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.3e-25 118.6 90 67.8
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 9.0e-25 117.9 100 65.0
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.5e-24 117.1 90 66.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-24 117.1 125 52.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-24 117.1 125 52.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.0e-24 116.7 129 55.8
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 4.5e-24 115.5 186 44.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-23 114.0 90 65.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.2e-23 113.2 200 44.0
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.9e-23 112.8 167 47.9
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 3.8e-23 112.5 156 49.4
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 3.9e-20 102.4 63 85.7
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.9e-19 100.1 88 55.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.9e-19 100.1 88 55.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.3e-18 97.4 88 60.2
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.3e-18 97.4 88 54.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.6e-18 97.1 88 59.1
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.8e-18 96.3 163 46.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.8e-18 95.5 116 56.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 6.3e-18 95.1 190 42.6
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.3e-18 95.1 86 54.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 8.2e-18 94.7 86 57.0
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.1e-17 94.4 86 58.1
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.1e-17 94.4 86 57.0
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.1e-17 94.4 81 64.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.4e-17 94.0 91 57.1
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.4e-17 94.0 182 41.8
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 2.4e-17 93.2 97 51.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.4e-17 93.2 88 58.0
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.4e-17 93.2 88 54.5
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.1e-17 92.8 88 56.8
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.1e-17 92.8 86 58.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 3.1e-17 92.8 86 57.0
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.1e-17 92.8 88 54.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.1e-17 92.8 96 55.2
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.1e-17 92.4 89 56.2
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 4.1e-17 92.4 146 41.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 4.1e-17 92.4 86 57.0
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 4.1e-17 92.4 86 55.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 5.3e-17 92.0 86 57.0
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.3e-17 92.0 126 50.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 6.9e-17 91.7 89 56.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 56.2
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 56.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 56.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.9e-17 91.7 89 57.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 6.9e-17 91.7 88 55.7
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.9e-17 91.7 88 55.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 9.0e-17 91.3 86 57.0
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 9.0e-17 91.3 88 56.8
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 9.0e-17 91.3 86 58.1
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.2e-16 90.9 86 57.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-16 90.9 105 55.2
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.5e-16 90.5 190 43.7
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-16 90.5 188 42.6
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 54.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 54.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 55.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 55.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 55.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.5e-16 90.5 99 50.5
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.5e-16 90.5 99 50.5
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.5e-16 90.5 88 56.8
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 2.0e-16 90.1 86 57.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.6e-16 89.7 174 37.9
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.6e-16 89.7 86 54.7
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.6e-16 89.7 88 54.5
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.4e-16 89.4 88 53.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-16 89.4 88 55.7
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.4e-16 89.4 170 37.6
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.5e-16 89.0 88 53.4
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 4.5e-16 89.0 86 55.8
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.5e-16 89.0 86 54.7
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 5.9e-16 88.6 88 54.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.7e-16 88.2 83 55.4
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 7.7e-16 88.2 86 53.5
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 7.7e-16 88.2 66 72.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.0e-15 87.8 163 44.2
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.7e-15 87.0 99 49.5
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 2.2e-15 86.7 86 52.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.2e-15 86.7 84 54.8
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.2e-15 86.7 90 52.2
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.9e-15 86.3 84 53.6
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.0e-15 85.5 107 45.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 6.5e-15 85.1 186 40.3
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 6.5e-15 85.1 95 55.8
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 6.5e-15 85.1 95 50.5
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 3.2e-14 82.8 86 50.0
Medtr3g040420 Medicago truncatula HOM05D004087 ORTHO05D004787 4.6e-13 79.0 103 46.6
Medtr0065s0080 Medicago truncatula HOM05D004087 ORTHO05D004787 7.9e-13 78.2 103 46.6
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.9e-13 78.2 199 36.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 6.7e-12 75.1 73 54.8
Medtr1g116050 Medicago truncatula HOM05D004087 ORTHO05D004787 6.7e-12 75.1 101 43.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 8.8e-12 74.7 86 52.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 8.8e-12 74.7 84 50.0
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.0e-11 73.6 71 57.7
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 7.4e-11 71.6 71 50.7
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 9.7e-11 71.2 67 53.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 4.1e-09 65.9 95 35.8
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 2.0e-08 63.5 108 39.8
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.0e-07 61.2 58 56.9
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-07 60.1 58 56.9
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 2.2e-07 60.1 57 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 3.8e-07 59.3 66 47.0
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 6.5e-07 58.5 57 56.1
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 8.5e-07 58.2 62 53.2
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.4e-06 57.4 155 40.6
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.9e-06 57.0 57 54.4
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.5e-06 56.6 38 76.3
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.5e-06 55.5 53 52.8
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 9.4e-06 54.7 61 54.1


User provided reference genes

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