Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 1.8e-111 406.0 210 100.0
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.7e-110 401.0 210 98.1
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.9e-107 391.0 210 96.7
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 7.7e-107 390.6 210 97.1
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.6e-83 313.2 199 83.4
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.7e-82 309.7 210 81.0
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.2e-76 288.9 207 74.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.1e-76 288.5 207 74.9
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 3.5e-75 285.4 206 74.8
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 1.3e-74 283.5 208 75.0
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.7e-74 283.1 212 74.1
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 3.9e-74 282.0 207 74.4
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 7.3e-73 277.7 208 76.4
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 2.8e-72 275.8 207 72.5
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.3e-71 272.7 207 72.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 2.3e-71 272.7 207 71.5
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.3e-71 272.7 211 71.6
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 4.4e-70 268.5 216 67.6
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 5.8e-70 268.1 207 70.5
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 5.8e-70 268.1 208 71.6
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.2e-69 266.2 208 71.6
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 4.9e-69 265.0 208 70.7
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.1e-68 263.8 211 70.1
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 3.2e-68 262.3 208 73.1
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.2e-68 262.3 208 73.1
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 9.2e-68 260.8 208 70.2
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-67 260.0 208 72.6
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.7e-67 259.2 207 69.6
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.0e-67 258.1 208 72.6
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 6.0e-67 258.1 207 70.0
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 7.8e-67 257.7 211 68.7
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-66 256.9 208 72.1
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.9e-66 255.4 213 68.5
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 5.1e-66 255.0 207 69.6
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 6.6e-66 254.6 219 66.7
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 6.6e-66 254.6 210 72.4
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.5e-65 253.4 212 67.9
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.9e-65 253.1 215 66.5
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 4.3e-65 251.9 208 68.3
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.2e-64 250.4 207 69.6
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 2.1e-64 249.6 207 68.1
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.2e-64 248.1 207 67.6
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 8.1e-64 247.7 208 68.3
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.8e-63 246.5 208 68.3
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.1e-63 245.7 208 67.8
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.5e-62 243.4 208 66.8
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 1.5e-62 243.4 210 65.2
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 4.4e-62 241.9 210 66.7
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 2.2e-61 239.6 208 66.8
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 8.4e-61 237.7 192 66.1
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 1.4e-60 236.9 207 65.7
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.4e-60 236.9 207 65.7
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 2.4e-60 236.1 208 65.9
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 2.4e-60 236.1 206 64.6
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.4e-60 236.1 207 65.7
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 4.2e-60 235.3 211 65.4
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 7.1e-60 234.6 211 66.4
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 7.1e-60 234.6 208 65.4
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.2e-59 233.8 211 65.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.6e-59 233.4 164 77.4
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 2.1e-59 233.0 211 64.5
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-59 233.0 206 65.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-59 233.0 206 65.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-59 233.0 206 65.5
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.7e-59 232.6 209 66.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.7e-59 232.6 206 65.0
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 2.7e-59 232.6 206 64.1
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 3.5e-59 232.3 209 66.5
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 3.5e-59 232.3 214 62.1
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 4.6e-59 231.9 211 65.9
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.0e-58 230.7 205 64.4
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.0e-58 230.7 210 67.1
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.7e-58 229.9 209 66.5
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 1.7e-58 229.9 207 65.2
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.7e-58 229.9 212 63.7
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.0e-58 229.2 212 63.7
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.9e-58 228.8 210 66.7
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.9e-58 228.8 209 65.6
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 5.1e-58 228.4 215 65.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 6.6e-58 228.0 208 64.4
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 6.6e-58 228.0 211 64.0
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 6.6e-58 228.0 207 62.3
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.1e-57 227.3 210 66.2
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.1e-57 227.3 207 65.2
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 1.1e-57 227.3 212 64.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-57 227.3 212 63.2
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.1e-57 227.3 211 61.6
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-57 226.9 212 64.2
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.5e-57 226.9 212 64.2
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.9e-57 226.5 212 63.7
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.9e-57 226.5 212 63.7
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.9e-57 226.5 212 63.7
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.9e-57 226.5 212 63.7
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.5e-57 226.1 212 63.2
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.5e-57 226.1 209 62.7
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 2.5e-57 226.1 208 64.9
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 3.3e-57 225.7 209 64.6
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 3.3e-57 225.7 208 63.0
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 4.3e-57 225.3 208 61.5
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 5.6e-57 224.9 208 64.4
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 5.6e-57 224.9 207 62.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 9.6e-57 224.2 214 63.1
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-56 223.8 218 61.5
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-56 223.8 218 61.5
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.6e-56 223.4 208 61.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.6e-56 223.4 209 62.7
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 2.1e-56 223.0 207 62.8
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.8e-56 222.6 211 64.0
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-55 220.7 211 62.1
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.1e-55 220.7 211 62.1
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.1e-55 220.7 209 61.2
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.4e-55 220.3 211 61.6
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 1.4e-55 220.3 209 61.2
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 3.1e-55 219.2 210 61.9
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 3.1e-55 219.2 211 61.1
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 1.2e-54 217.2 115 93.0
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.2e-54 217.2 208 63.0
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.2e-54 217.2 156 71.2
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 1.5e-54 216.9 212 61.3
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 2.6e-54 216.1 133 82.7
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.7e-53 213.4 104 99.0
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.9e-53 212.6 115 90.4
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 8.4e-53 211.1 104 98.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 1.4e-52 210.3 104 97.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 5.4e-52 208.4 111 90.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 7.1e-52 208.0 104 96.2
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 9.3e-52 207.6 212 60.8
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.2e-51 207.2 207 59.4
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.6e-51 206.8 104 96.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.6e-51 206.8 186 60.8
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 4.6e-51 205.3 207 57.0
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 4.6e-51 205.3 160 67.5
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 6.6e-50 201.4 110 90.9
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 5.3e-47 191.8 103 93.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 9.0e-47 191.0 100 90.0
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-46 190.3 199 57.8
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 2.4e-44 183.0 208 55.3
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 4.6e-43 178.7 103 81.6
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.3e-42 176.4 100 82.0
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.1e-42 175.3 104 79.8
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.7e-42 174.9 102 81.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.3e-41 172.6 111 73.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.0e-38 163.3 106 73.6
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.5e-36 156.4 101 70.3
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.9e-34 149.1 169 55.6
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.3e-32 144.1 102 64.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 2.6e-30 136.3 99 64.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 4.8e-24 115.5 100 53.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.1e-20 104.4 100 50.0
VMungo0540G0735 Vigna mungo HOM05D004814 ORTHO05D005778 1.4e-12 77.4 102 51.0
RcHm_v2.0_Chr4g0438311 Rosa chinensis HOM05D001946 ORTHO05D002111 1.1e-07 61.2 118 33.1
FvH4_4g30020 Fragaria vesca HOM05D001946 ORTHO05D002111 5.9e-06 55.5 113 31.0
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 5.9e-06 55.5 113 31.0


User provided reference genes

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