Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.08U2Q7 Arachis hypogaea HOM05D000227 ORTHO05D004725 2.1e-39 165.2 85 100.0
arahy.Tifrunner.gnm1.ann1.6JR7QB Arachis hypogaea HOM05D000227 ORTHO05D004725 4.3e-16 87.8 74 66.2
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 9.0e-14 80.1 71 63.4
arahy.Tifrunner.gnm1.ann1.SNW2XV Arachis hypogaea HOM05D000227 ORTHO05D004725 1.9e-11 72.4 68 61.8
Glyma.08G177600 Glycine max HOM05D000227 ORTHO05D004725 2.3e-09 65.5 74 56.8
Glyma.15G055100 Glycine max HOM05D000227 ORTHO05D004725 2.3e-09 65.5 74 56.8
Phvul.006G204800 Phaseolus vulgaris HOM05D000227 ORTHO05D004725 3.0e-09 65.1 74 55.4
Medtr7g074020 Medicago truncatula HOM05D000227 ORTHO05D004725 8.8e-09 63.5 74 54.1
Psat3g117320 Pisum sativum HOM05D000227 ORTHO05D004725 1.9e-08 62.4 74 55.4
TPR.G24339 Trifolium pratense HOM05D000227 ORTHO05D004725 1.9e-08 62.4 74 54.1
Lj2g0006728 Lotus japonicus HOM05D000227 ORTHO05D004725 2.5e-08 62.0 74 54.1
Lalb_Chr09g0323161 Lupinus albus HOM05D000227 ORTHO05D004725 3.3e-08 61.6 66 54.5
ClCG02G012810 Citrullus lanatus HOM05D000227 ORTHO05D004725 4.3e-08 61.2 66 60.6
Medtr6g007613 Medicago truncatula HOM05D000227 ORTHO05D004725 4.3e-08 61.2 74 54.1
Psat1g058800 Pisum sativum HOM05D000227 ORTHO05D004725 5.7e-08 60.8 74 52.7
Sabra05G0112700 Salix brachista HOM05D000227 ORTHO05D004725 5.7e-08 60.8 66 56.1
MELO3C020899.2 Cucumis melo HOM05D000227 ORTHO05D004725 7.4e-08 60.5 66 60.6
CsaV3_2G016880 Cucumis sativus L. HOM05D000227 ORTHO05D004725 7.4e-08 60.5 66 60.6
Sed0022474 Sechium edule HOM05D000227 ORTHO05D004725 7.4e-08 60.5 66 60.6
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 9.7e-08 60.1 68 54.4
CiPaw.02G008600 Carya illinoinensis HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
Ca_24773_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004725 2.2e-07 58.9 74 51.4
Gohir.A10G092100 Gossypium hirsutum HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
Gohir.D10G096300 Gossypium hirsutum HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
Gorai.011G105500 Gossypium raimondii HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
QL06p041468 Quercus lobata HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
vmacro17950 Vaccinium macrocarpon HOM05D000227 ORTHO05D004725 2.2e-07 58.9 67 58.2
Aa31LG4G18590 Aethionema arabicum HOM05D000227 ORTHO05D004725 2.8e-07 58.5 74 51.4
MD15G1283300 Malus domestica HOM05D000227 ORTHO05D004725 2.8e-07 58.5 67 58.2
SalBow8G3918 Salvia bowleyana HOM05D000227 ORTHO05D004725 2.8e-07 58.5 75 54.7
Cc00_g00950 Coffea canephora HOM05D000227 ORTHO05D004725 3.7e-07 58.2 67 56.7
MD02G1171500 Malus domestica HOM05D000227 ORTHO05D004725 3.7e-07 58.2 67 58.2
PGR102G1883 Punica granatum HOM05D000227 ORTHO05D004725 3.7e-07 58.2 67 58.2
Dinv28254 Davidia involucrata HOM05D000227 ORTHO05D004725 4.8e-07 57.8 67 55.2
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 4.8e-07 57.8 67 56.7
Duzib147G0217 Durio zibethinus HOM05D000227 ORTHO05D004725 6.3e-07 57.4 67 56.7
FvH4_1g15980 Fragaria vesca HOM05D000227 ORTHO05D004725 6.3e-07 57.4 67 55.2
FAN19G1900 Fragaria x ananassa HOM05D000227 ORTHO05D004725 6.3e-07 57.4 67 55.2
FAN26G1743 Fragaria x ananassa HOM05D000227 ORTHO05D004725 6.3e-07 57.4 67 55.2
Thecc.01G055300 Theobroma cacao HOM05D000227 ORTHO05D004725 6.3e-07 57.4 67 56.7
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 8.2e-07 57.0 73 50.7
Atru.chr3.338 Acer truncatum HOM05D000227 ORTHO05D004725 1.1e-06 56.6 66 53.0
Dinv16573 Davidia involucrata HOM05D000227 ORTHO05D004725 1.1e-06 56.6 67 53.7
CSS0018662 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 1.4e-06 56.2 68 55.9
CSS0041531 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 1.4e-06 56.2 68 55.9
Ciclev10026635m.g Citrus clementina HOM05D000227 ORTHO05D004725 1.4e-06 56.2 67 56.7
Duzib187G0456 Durio zibethinus HOM05D000227 ORTHO05D004725 1.4e-06 56.2 67 55.2
Thhalv10008929m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 1.4e-06 56.2 74 50.0
Glyma.18G100800 Glycine max HOM05D000227 ORTHO05D004725 1.4e-06 56.2 74 50.0
Oeu032226.1 Olea europaea HOM05D000227 ORTHO05D004725 1.4e-06 56.2 60 55.0
Potri.005G138000 Populus trichocarpa HOM05D000227 ORTHO05D004725 1.4e-06 56.2 67 53.7
THA.LOC104821257 Tarenaya hassleriana HOM05D000227 ORTHO05D004725 1.4e-06 56.2 74 50.0
CSS0005844 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 1.8e-06 55.8 67 56.7
Carub.0005s1667 Capsella rubella HOM05D000227 ORTHO05D004725 1.8e-06 55.8 74 50.0
CARHR159830 Cardamine hirsuta HOM05D000227 ORTHO05D004725 1.8e-06 55.8 74 50.0
Rhsim09G0169200 Rhododendron simsii HOM05D000227 ORTHO05D004725 1.8e-06 55.8 66 53.0
DCAR_025730 Daucus carota HOM05D000227 ORTHO05D004725 2.4e-06 55.5 66 57.6
Glyma.18G101100 Glycine max HOM05D000227 ORTHO05D004725 2.4e-06 55.5 74 50.0
BcaB05g23213 Brassica carinata HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
BcaC09g50023 Brassica carinata HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
A01p24180 Brassica napus HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
C01p29890 Brassica napus HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
BolC1t02931H Brassica oleracea HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
BraA01t02330Z Brassica rapa HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
CSS0046781 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 3.1e-06 55.1 67 56.7
CANSAT01G0976 Cannabis sativa HOM05D000227 ORTHO05D004725 3.1e-06 55.1 67 56.7
Cpa.g.sc55.154 Carica papaya HOM05D000227 ORTHO05D004725 3.1e-06 55.1 67 55.2
Sp5g11820 Schrenkiella parvula HOM05D000227 ORTHO05D004725 3.1e-06 55.1 74 48.6
Aqoxy5G01235 Aquilegia oxysepala HOM05D000227 ORTHO05D004725 4.1e-06 54.7 75 50.7
AT3G50360 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 4.1e-06 54.7 74 51.4
Eucgr.H01660 Eucalyptus grandis HOM05D000227 ORTHO05D004725 4.1e-06 54.7 66 54.5
Gohir.D03G022050 Gossypium hirsutum HOM05D000227 ORTHO05D004725 4.1e-06 54.7 59 57.6
Gorai.003G023300 Gossypium raimondii HOM05D000227 ORTHO05D004725 4.1e-06 54.7 59 57.6
Manes.13G124900 Manihot esculenta HOM05D000227 ORTHO05D004725 4.1e-06 54.7 67 55.2
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 5.3e-06 54.3 66 56.1
ECA248G2825 Erigeron canadensis HOM05D000227 ORTHO05D004725 5.3e-06 54.3 65 52.3
HanXRQChr01g0009261 Helianthus annuus HOM05D000227 ORTHO05D004725 5.3e-06 54.3 65 52.3
Nn5g30315 Nelumbo nucifera HOM05D000227 ORTHO05D004725 5.3e-06 54.3 75 49.3
PSO541G6342 Papaver somniferum HOM05D000227 ORTHO05D004725 5.3e-06 54.3 67 52.2
PSO675G3845 Papaver somniferum HOM05D000227 ORTHO05D004725 5.3e-06 54.3 67 52.2
Prupe.7G133900 Prunus persica HOM05D000227 ORTHO05D004725 5.3e-06 54.3 67 56.7
SGA_v2.0_scaffold12G06271 Striga asiatica HOM05D000227 ORTHO05D004725 5.3e-06 54.3 66 56.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 6.9e-06 53.9 69 53.6
Hma1.2p1_0461F.1_g157830 Hydrangea macrophylla HOM05D000227 ORTHO05D004725 6.9e-06 53.9 67 53.7
Hund07211 Selenicereus undatus HOM05D000227 ORTHO05D004725 6.9e-06 53.9 64 54.7
EL10Ac4g09665 Beta vulgaris HOM05D000227 ORTHO05D004725 9.1e-06 53.5 64 53.1
Lj4A148G20 Lonicera japonica HOM05D000227 ORTHO05D004725 9.1e-06 53.5 58 55.2


User provided reference genes

Program Settings