Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 0.0e+00 1251.5 677 100.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 0.0e+00 1142.9 674 93.5
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.1e-66 258.8 799 36.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.1e-56 225.7 683 37.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 7.1e-53 213.0 682 33.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.3e-50 204.1 680 36.3
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.1e-48 199.1 733 34.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.2e-44 185.7 671 33.2
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-42 178.7 595 34.3
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-41 175.3 697 33.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.1e-40 172.6 678 33.0
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-40 171.4 596 34.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.2e-30 138.3 393 36.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.5e-29 134.8 316 38.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 9.4e-29 132.9 286 42.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.2e-28 132.5 661 29.2
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.6e-28 130.6 556 30.0
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.8e-27 128.6 674 28.2
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 5.1e-27 127.1 429 31.5
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 8.2e-25 119.8 410 36.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.4e-24 118.2 719 30.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.5e-23 115.5 398 32.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.6e-23 114.8 414 35.3
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 3.4e-23 114.4 696 30.6
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.7e-23 113.2 250 40.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.0e-22 112.8 469 33.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.9e-22 111.3 279 39.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.9e-22 111.3 436 31.7
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 6.5e-22 110.2 194 50.0
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.5e-21 107.1 430 31.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 9.4e-21 106.3 421 30.2
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.7e-20 104.0 394 34.3
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.7e-20 104.0 688 27.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-19 102.4 367 32.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-18 98.2 748 26.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.3e-18 97.8 433 32.6
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.2e-17 95.1 390 30.8
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.2e-17 95.1 369 31.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.7e-17 94.4 234 38.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 8.2e-17 93.2 653 27.6
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 3.1e-16 91.3 875 26.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.3e-16 90.5 371 31.3
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.1e-16 89.7 738 26.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-15 89.4 231 39.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.5e-15 89.0 697 28.6
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.6e-15 88.2 382 31.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.5e-15 87.8 430 28.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 4.5e-15 87.4 497 30.6
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.5e-15 87.4 706 27.3
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 5.9e-15 87.0 264 39.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.9e-15 87.0 250 37.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.0e-14 86.3 183 42.1
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.3e-14 85.9 336 31.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.7e-14 85.5 318 33.6
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.2e-14 85.1 186 39.8
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.2e-14 85.1 373 28.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.8e-14 84.3 458 28.8
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 3.8e-14 84.3 186 39.8
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.5e-14 83.6 486 28.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.5e-14 83.6 184 39.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 8.5e-14 83.2 289 32.5
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.2e-13 81.3 308 31.5
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.2e-13 81.3 443 28.9
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.2e-13 80.9 163 39.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 4.2e-13 80.9 207 37.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.2e-13 80.1 665 26.6
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 7.2e-13 80.1 677 28.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.6e-12 79.0 270 34.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.1e-12 78.6 163 38.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.1e-12 78.6 997 24.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 4.7e-12 77.4 296 31.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.1e-12 77.0 444 27.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.4e-11 75.9 258 33.7
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.8e-11 75.5 346 27.2
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.3e-11 75.1 642 26.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-11 74.7 657 27.1
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.8e-11 73.2 685 27.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.0e-10 72.0 220 34.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.7e-10 70.5 467 26.6
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.7e-10 70.5 234 32.5
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 9.7e-10 69.7 272 35.3
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.7e-09 68.9 329 31.6
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.3e-09 67.0 474 26.4
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 8.2e-09 66.6 237 34.6
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.2e-09 66.6 171 37.4
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-08 66.2 457 27.6
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-08 66.2 457 27.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.8e-08 65.5 372 28.2
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-08 65.1 720 25.3
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 3.1e-08 64.7 269 32.0
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.1e-08 64.3 759 24.4
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.3e-08 63.9 168 37.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 7.0e-08 63.5 449 26.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.0e-08 63.5 394 26.6
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.2e-07 62.8 275 32.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-07 62.8 287 30.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.6e-07 62.4 315 29.8
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 2.6e-07 61.6 119 40.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.6e-07 61.6 400 27.2
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.5e-07 61.2 376 26.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.9e-07 60.5 233 32.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 7.7e-07 60.1 183 32.8
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.0e-06 59.7 677 24.8
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-06 59.3 511 26.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.3e-06 59.3 372 29.3
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 2.2e-06 58.5 153 34.0
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 3.8e-06 57.8 275 31.6
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.8e-06 57.8 207 29.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 6.5e-06 57.0 580 24.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 8.5e-06 56.6 280 30.0


User provided reference genes

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