Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 4.7e-82 307.8 149 100.0
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 4.8e-79 297.7 147 98.6
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.2e-50 203.4 131 74.0
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 2.6e-48 195.7 128 71.9
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 3.4e-48 195.3 131 70.2
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 7.5e-48 194.1 133 71.4
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.3e-44 183.3 133 67.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 6.6e-44 181.0 146 63.0
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.2e-42 176.8 145 60.7
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 8.1e-42 174.1 130 63.1
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 2.0e-40 169.5 132 65.9
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.6e-40 169.1 131 61.1
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 3.4e-40 168.7 147 59.9
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.4e-38 162.5 131 61.1
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 4.1e-38 161.8 131 60.3
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.6e-37 159.8 145 55.2
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 3.5e-37 158.7 142 57.0
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 4.6e-37 158.3 127 60.6
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 3.9e-36 155.2 130 59.2
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 8.6e-36 154.1 136 57.4
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.9e-35 152.9 129 58.1
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 2.5e-35 152.5 131 54.2
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 3.3e-35 152.1 160 49.4
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 7.3e-35 151.0 144 54.2
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.2e-34 150.2 131 55.7
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 2.1e-34 149.4 132 55.3
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 2.8e-34 149.1 130 53.8
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.1e-33 147.1 166 46.4
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 1.4e-33 146.7 150 51.3
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.4e-33 146.0 135 51.9
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 3.1e-33 145.6 129 57.4
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 4.0e-33 145.2 135 52.6
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 4.0e-33 145.2 128 57.8
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 5.2e-33 144.8 150 49.3
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 5.2e-33 144.8 133 50.4
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 5.2e-33 144.8 133 51.1
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 8.9e-33 144.1 126 54.8
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 8.9e-33 144.1 133 51.9
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.2e-32 143.7 131 55.0
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 4.4e-32 141.7 134 52.2
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 7.6e-32 141.0 170 47.1
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 2.2e-31 139.4 145 53.1
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 2.9e-31 139.0 137 48.2
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 3.8e-31 138.7 131 53.4
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 1.1e-30 137.1 131 51.1
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 5.4e-30 134.8 142 48.6
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 5.4e-30 134.8 161 47.8
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.2e-29 133.7 128 50.0
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.6e-29 133.3 135 52.6
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 2.7e-29 132.5 142 48.6
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 2.7e-29 132.5 171 45.0
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 4.6e-29 131.7 137 46.7
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 7.8e-29 131.0 131 51.1
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 2.3e-28 129.4 156 44.9
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.0e-28 129.0 171 44.4
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 5.1e-28 128.3 156 42.9
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 5.1e-28 128.3 157 46.5
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 8.7e-28 127.5 149 46.3
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.5e-27 126.7 165 43.6
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 4.3e-27 125.2 168 44.0
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 5.6e-27 124.8 169 43.2
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 2.1e-26 122.9 157 43.9
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 6.2e-26 121.3 162 42.0
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 2.4e-25 119.4 123 47.2
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 4.0e-25 118.6 156 44.2
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 5.2e-25 118.2 168 41.1
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 1.5e-24 116.7 132 46.2
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 2.0e-24 116.3 180 40.6
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 5.8e-24 114.8 121 56.2
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 1.3e-23 113.6 112 56.2
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 1.3e-23 113.6 138 45.7
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.3e-23 113.6 132 44.7
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.7e-23 113.2 147 41.5
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 2.2e-23 112.8 126 47.6
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.9e-22 109.8 78 66.7
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.9e-22 109.8 78 66.7
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 3.2e-22 109.0 167 38.3
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 2.1e-21 106.3 169 37.3
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 2.1e-21 106.3 144 43.1
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 3.5e-21 105.5 129 43.4
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 3.5e-21 105.5 139 44.6
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 3.9e-20 102.1 141 41.1
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 6.6e-20 101.3 191 36.1
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 6.6e-20 101.3 166 36.7
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.5e-19 100.1 158 38.0
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 2.8e-18 95.9 132 40.9
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 4.8e-18 95.1 141 39.0
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 2.4e-17 92.8 131 40.5
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 3.1e-17 92.4 93 54.8
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.2e-16 90.5 148 36.5
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 3.4e-16 89.0 198 31.8
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 4.5e-16 88.6 131 38.2
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 2.2e-15 86.3 198 31.8
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 6.4e-15 84.7 96 46.9
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.1e-14 84.0 77 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.9e-14 83.2 132 34.8
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 7.1e-14 81.3 195 31.8
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 7.1e-14 81.3 123 41.5
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 3.5e-13 79.0 129 34.9
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 6.0e-13 78.2 149 31.5
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 6.0e-13 78.2 47 66.0
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.3e-12 76.3 136 33.8
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 3.0e-12 75.9 100 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 4.3e-11 72.0 100 38.0
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 4.3e-11 72.0 71 49.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.8e-09 66.6 90 43.3
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 4.0e-09 65.5 54 55.6
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 1.2e-08 63.9 54 55.6
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.5e-08 63.5 107 34.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 5.8e-08 61.6 123 34.1
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.2e-06 55.8 72 44.4
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 7.1e-06 54.7 95 34.7


User provided reference genes

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