Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 3.5e-112 408.3 208 100.0
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 3.5e-112 408.3 208 100.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 3.5e-112 408.3 208 100.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 3.5e-112 408.3 208 100.0
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 5.0e-90 334.7 210 81.9
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 8.8e-87 323.9 198 83.3
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 8.8e-87 323.9 198 83.3
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.3e-85 320.1 198 82.3
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.2e-85 319.3 198 82.3
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.7e-85 318.5 210 79.5
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 3.7e-85 318.5 214 77.6
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 4.8e-85 318.2 203 81.8
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 6.3e-85 317.8 198 82.3
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.4e-84 316.6 200 81.0
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 4.5e-83 311.6 197 81.2
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 4.5e-83 311.6 197 81.2
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 4.5e-83 311.6 197 81.2
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.9e-82 308.9 198 79.8
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 3.8e-82 308.5 197 79.2
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 7.0e-76 287.7 196 77.6
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.6e-75 286.6 199 76.9
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.6e-75 286.6 199 76.9
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.7e-74 283.1 214 70.6
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.7e-74 283.1 214 70.6
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 3.8e-74 282.0 214 70.6
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 3.8e-74 282.0 214 70.6
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 3.8e-74 282.0 214 70.6
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 3.8e-74 282.0 214 70.6
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 3.8e-74 282.0 214 70.6
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.1e-73 280.4 214 70.1
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 7.2e-73 277.7 192 75.5
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 2.0e-67 259.6 182 74.7
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 3.5e-67 258.8 126 100.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.7e-64 248.4 166 76.5
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.4e-63 246.9 133 95.5
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 3.7e-61 238.8 213 61.5
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 7.8e-59 231.1 159 74.8
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 9.5e-57 224.2 128 85.9
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 9.5e-57 224.2 128 85.9
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 8.0e-56 221.1 127 84.3
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 2.3e-55 219.5 126 84.1
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.9e-55 217.6 164 70.1
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-52 209.9 163 69.3
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 7.0e-52 208.0 128 79.7
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 7.3e-49 198.0 147 69.4
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.0e-46 189.9 126 74.6
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 4.4e-46 188.7 127 77.2
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 3.7e-45 185.7 111 82.0
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.2e-44 181.0 116 75.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.1e-43 179.9 108 81.5
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.0e-42 177.6 198 54.5
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.3e-42 177.2 198 55.1
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-41 174.1 125 70.4
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 5.4e-36 155.2 125 68.0
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 7.1e-36 154.8 89 84.3
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 9.2e-36 154.5 105 75.2
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 3.9e-34 149.1 113 69.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 1.8e-31 140.2 90 75.6
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 4.0e-31 139.0 75 89.3
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.3e-29 134.0 110 64.5
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 2.2e-29 133.3 100 71.0
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.8e-29 132.5 80 78.8
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 1.1e-28 131.0 129 55.0
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 9.2e-28 127.9 75 81.3
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 3.1e-23 112.8 124 53.2
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 2.0e-22 110.2 79 70.9
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.8e-22 108.6 79 67.1
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 7.3e-17 91.7 65 70.8
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 9.6e-17 91.3 86 60.5
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.4e-13 78.6 62 59.7
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 7.1e-12 75.1 50 70.0
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 5.6e-09 65.5 40 75.0
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.8e-08 63.2 65 61.5
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.6e-06 56.6 37 78.4


User provided reference genes

Program Settings