Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 9.6e-83 310.1 152 100.0
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 9.6e-83 310.1 152 100.0
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 9.6e-83 310.1 152 100.0
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 9.6e-83 310.1 152 100.0
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 9.6e-83 310.1 152 100.0
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.5e-55 217.6 152 73.7
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.5e-55 217.6 152 73.7
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 1.1e-54 216.9 152 73.0
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.9e-54 216.1 152 73.7
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 5.5e-54 214.5 152 73.0
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 5.5e-54 214.5 152 73.0
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 1.2e-53 213.4 152 71.7
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.2e-53 213.4 152 71.7
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.7e-53 212.2 152 72.4
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 4.6e-53 211.5 155 72.3
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 4.6e-53 211.5 152 71.7
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.0e-52 210.3 152 71.7
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-51 206.1 147 71.4
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 2.6e-51 205.7 147 72.1
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 4.4e-51 204.9 147 70.7
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.3e-50 203.4 152 69.7
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 3.7e-50 201.8 152 71.1
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 3.7e-50 201.8 153 69.3
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 8.2e-50 200.7 155 70.3
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 8.2e-50 200.7 154 71.4
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.1e-49 200.3 152 69.1
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 1.4e-49 199.9 154 71.4
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 1.4e-49 199.9 154 71.4
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 1.4e-49 199.9 154 71.4
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 3.1e-49 198.7 154 70.8
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 3.1e-49 198.7 154 70.8
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 6.9e-49 197.6 154 70.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-47 193.0 144 68.8
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 3.8e-47 191.8 154 69.5
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 8.5e-47 190.7 151 68.2
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.7e-45 184.9 147 65.3
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.7e-45 184.9 151 64.2
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 5.2e-44 181.4 153 67.3
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 6.7e-44 181.0 165 60.6
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.4e-41 173.3 131 68.7
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.8e-41 172.9 152 61.8
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.3e-36 156.0 149 56.4
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 4.4e-35 151.8 138 60.1
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 3.7e-34 148.7 152 55.9
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 2.2e-31 139.4 130 60.0
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 3.8e-31 138.7 130 60.0
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 3.8e-31 138.7 130 60.0
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 5.2e-28 128.3 141 52.5
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.7e-23 113.2 94 59.6
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.0e-23 111.7 118 54.2
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.5e-19 100.1 92 59.8
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.2e-18 96.3 110 51.8
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-17 94.0 114 48.2
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 4.1e-17 92.0 42 100.0
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 9.2e-17 90.9 63 69.8
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 9.2e-17 90.9 63 69.8
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 7.3e-14 81.3 115 47.0
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 1.0e-12 77.4 48 77.1
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 6.8e-12 74.7 52 69.2
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-10 69.7 48 70.8
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 6.4e-10 68.2 35 88.6
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 3.5e-08 62.4 49 75.5
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 5.0e-07 58.5 28 96.4
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-06 57.4 35 77.1


User provided reference genes

Program Settings