Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.4e-164 582.8 287 100.0
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 5.6e-124 448.0 289 78.9
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 5.6e-124 448.0 289 78.9
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 2.3e-122 442.6 287 77.7
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.6e-121 439.1 287 77.0
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 2.9e-120 435.6 292 76.4
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 7.0e-119 431.0 292 76.4
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 7.0e-119 431.0 289 76.1
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 2.1e-118 429.5 290 76.6
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 2.1e-118 429.5 290 76.6
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 7.8e-118 427.6 290 76.2
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.7e-117 426.4 293 76.1
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.6e-117 424.1 282 75.9
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.9e-116 422.9 290 75.5
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 3.6e-115 418.7 289 74.4
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 5.8e-113 411.4 290 74.8
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.2e-110 403.7 291 72.5
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.2e-110 403.7 291 72.5
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.6e-110 403.3 291 72.5
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 2.7e-110 402.5 291 72.5
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 2.7e-110 402.5 291 72.5
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 2.7e-110 402.5 291 72.5
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 7.3e-108 394.4 291 71.5
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.1e-106 390.6 264 75.0
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 1.4e-106 390.2 268 75.4
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 2.4e-106 389.4 288 71.5
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-105 386.3 279 71.0
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 9.9e-105 384.0 289 69.6
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 1.1e-98 364.0 177 100.0
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 6.4e-96 354.8 273 68.5
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.3e-93 347.1 237 75.5
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-90 337.4 267 68.5
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-90 337.4 267 68.5
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 9.0e-90 334.3 267 68.2
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.2e-88 329.7 236 72.0
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 6.2e-83 311.6 220 72.3
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 1.8e-82 310.1 152 100.0
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 1.8e-82 310.1 152 100.0
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 1.8e-82 310.1 152 100.0
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 1.8e-82 310.1 152 100.0
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.0e-77 294.3 227 67.8
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 9.0e-74 281.2 163 84.7
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 3.7e-67 259.2 126 100.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 3.7e-67 259.2 126 100.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 3.7e-67 259.2 126 100.0
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 3.4e-65 252.7 167 76.6
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 2.2e-64 250.0 289 52.2
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 8.8e-61 238.0 163 74.8
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 4.3e-60 235.7 288 51.0
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 1.5e-57 227.3 199 62.3
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 4.5e-57 225.7 136 80.9
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.4e-55 220.7 158 72.8
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 3.2e-55 219.5 130 82.3
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 3.6e-54 216.1 128 82.8
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 1.3e-51 207.6 273 48.0
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 2.6e-49 199.9 186 59.1
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 4.5e-49 199.1 130 73.8
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 6.7e-45 185.3 120 76.7
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.7e-45 185.3 147 65.3
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.8e-45 184.9 151 64.2
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 7.4e-44 181.8 187 54.5
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 6.3e-43 178.7 180 54.4
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 8.2e-43 178.3 137 72.3
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.8e-42 177.2 180 54.4
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-41 174.5 125 70.4
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-39 167.2 108 74.1
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 4.2e-39 166.0 141 62.4
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.6e-38 162.9 107 72.9
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.4e-36 156.0 149 56.4
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 9.7e-36 154.8 89 84.3
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 9.7e-36 154.8 74 100.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 2.5e-31 140.2 90 75.6
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.2e-31 139.8 89 71.9
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.4e-29 134.4 110 64.5
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-28 131.3 81 75.3
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.6e-24 115.2 90 67.8
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 2.5e-23 113.6 80 72.5
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.5e-23 113.6 192 43.8
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.3e-23 113.2 94 59.6
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.2e-23 112.1 118 54.2
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.1e-22 109.0 79 67.1
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.2e-18 96.7 110 51.8
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 1.7e-16 90.9 63 69.8
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.7e-16 90.9 63 69.8
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 3.9e-16 89.7 50 86.0
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.0e-16 89.4 60 78.3
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.8e-13 79.0 62 59.7
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 1.3e-11 74.7 52 69.2
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.2e-09 68.2 35 88.6
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 7.8e-09 65.5 40 75.0
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.8e-09 65.5 42 76.2
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.0e-08 65.1 35 80.0
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 4.3e-07 59.7 35 77.1


User provided reference genes

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