Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 9.8e-71 270.0 135 100.0
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 3.4e-63 245.0 150 84.0
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.8e-40 169.5 137 63.5
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 2.3e-40 169.1 137 65.0
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.2e-39 166.8 137 63.5
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.2e-39 166.8 137 63.5
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.2e-39 166.8 137 62.0
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.8
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-39 166.4 137 62.0
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 2.0e-39 166.0 137 62.0
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 2.0e-39 166.0 137 62.0
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.6e-39 165.6 137 63.5
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.6e-39 165.6 137 62.8
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.6e-39 165.6 137 63.5
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 3.4e-39 165.2 137 62.8
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 7.6e-39 164.1 137 62.0
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.9e-39 163.7 137 62.0
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.9e-39 163.7 137 62.0
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 2.9e-38 162.2 137 62.8
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 3.8e-38 161.8 137 62.8
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 4.9e-38 161.4 137 61.3
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.9e-38 161.4 137 61.3
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 6.4e-38 161.0 137 62.0
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-37 159.1 137 61.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-37 159.1 137 61.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-37 159.1 137 61.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-37 159.1 137 61.3
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 5.4e-37 157.9 137 59.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.2e-36 156.8 137 59.9
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.2e-36 156.8 137 60.6
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 2.7e-36 155.6 137 61.3
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 3.5e-36 155.2 137 58.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.7e-35 152.9 137 61.3
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.1e-35 151.4 137 59.1
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-34 150.2 137 59.9
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-34 150.2 137 59.9
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-34 150.2 137 59.9
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 7.3e-34 147.5 137 60.6
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-33 146.7 126 61.1
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.8e-33 145.6 126 61.1
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 6.2e-33 144.4 134 59.7
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.8e-32 142.9 126 60.3
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 1.8e-32 142.9 137 57.7
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.4e-32 142.5 126 59.5
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 3.1e-32 142.1 128 57.8
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 4.4e-31 138.3 137 52.6
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.8e-31 137.9 137 54.7
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.8e-31 137.9 135 54.8
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.2e-30 136.0 126 58.7
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.9e-30 135.6 126 57.1
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.1e-29 133.7 135 58.5
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 3.2e-29 132.1 137 53.3
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.6e-28 129.8 126 56.3
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-28 128.3 104 63.5
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 3.9e-27 125.2 138 52.9
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.3e-26 121.7 103 63.1
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.1e-25 119.4 135 50.4
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 9.9e-23 110.5 137 47.4
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.7e-22 109.8 80 70.0
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 4.9e-22 108.2 76 69.7
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.4e-22 107.5 135 45.9
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.1e-21 107.1 135 45.9
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.1e-21 107.1 137 47.4
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 7.1e-21 104.4 55 83.6
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.5e-20 102.1 125 51.2
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 4.3e-18 95.1 112 50.0
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 5.6e-18 94.7 137 42.3
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-17 93.6 48 85.4
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 6.2e-17 91.3 52 80.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.4e-16 89.4 110 50.0
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-16 89.0 51 76.5
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 3.1e-16 89.0 92 53.3
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 6.9e-16 87.8 77 58.4
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 4.5e-15 85.1 69 63.8
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 5.8e-15 84.7 137 36.5
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 8.4e-14 80.9 79 54.4
Lalb_Chr23g0274271 Lupinus albus HOM05D002578 ORTHO05D005154 2.4e-13 79.3 49 75.5
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.1e-12 76.3 72 55.6
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.1e-12 76.3 72 55.6
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 2.1e-12 76.3 83 51.8
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.7e-12 75.9 75 54.7
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.6e-12 75.1 79 51.9
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.6e-12 75.1 75 53.3
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.6e-12 75.1 79 51.9
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 6.0e-12 74.7 96 45.8
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 6.0e-12 74.7 75 52.0
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.0e-11 73.9 79 50.6
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.3e-11 73.6 72 54.2
arahy.Tifrunner.gnm1.ann1.HB4K1E Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-11 73.6 38 86.8
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 5.1e-11 71.6 100 43.0
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 1.9e-10 69.7 103 46.6
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 1.9e-10 69.7 100 47.0
Nn4g25226 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.2e-07 60.5 27 92.6
Nn7g37550 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.2e-07 60.5 27 92.6
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.5e-07 58.5 52 57.7
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.7e-06 56.6 54 51.9
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 2.2e-06 56.2 54 55.6


User provided reference genes

Program Settings