Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 2.0e-109 399.4 198 100.0
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 5.0e-31 139.0 170 47.1
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 1.1e-30 137.9 152 48.0
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 1.2e-29 134.4 152 48.7
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 1.2e-29 134.4 197 42.6
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 2.1e-29 133.7 152 46.7
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 3.6e-29 132.9 154 47.4
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 3.6e-29 132.9 154 47.4
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 3.6e-29 132.9 154 47.4
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 3.6e-29 132.9 152 48.0
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 3.6e-29 132.9 152 47.4
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 7.9e-29 131.7 197 41.6
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 1.0e-28 131.3 195 42.6
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 1.0e-28 131.3 153 47.1
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 1.0e-28 131.3 153 47.1
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 1.3e-28 131.0 152 46.1
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 1.3e-28 131.0 195 42.1
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 1.3e-28 131.0 195 42.1
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-28 130.6 152 46.7
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 2.3e-28 130.2 152 46.1
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 3.0e-28 129.8 152 46.1
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 3.0e-28 129.8 196 40.3
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 3.0e-28 129.8 152 45.4
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 3.9e-28 129.4 189 41.8
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 3.9e-28 129.4 152 47.4
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 5.1e-28 129.0 168 44.6
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 6.7e-28 128.6 168 44.6
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 6.7e-28 128.6 149 45.6
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 6.7e-28 128.6 195 41.0
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 8.7e-28 128.3 195 40.0
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 8.7e-28 128.3 195 41.5
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 1.1e-27 127.9 152 46.1
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 1.1e-27 127.9 144 47.9
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.5e-27 127.5 195 40.5
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 1.5e-27 127.5 152 46.1
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 1.9e-27 127.1 152 46.1
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 1.9e-27 127.1 152 46.1
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 2.5e-27 126.7 152 45.4
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.5e-27 126.7 195 41.0
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 2.5e-27 126.7 168 44.6
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 2.5e-27 126.7 149 47.0
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 3.3e-27 126.3 195 40.5
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 3.3e-27 126.3 186 41.4
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.3e-27 126.3 160 45.0
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 4.3e-27 125.9 154 44.8
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 4.3e-27 125.9 151 45.7
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 4.3e-27 125.9 148 48.6
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 5.7e-27 125.6 195 40.5
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 5.7e-27 125.6 196 40.3
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 5.7e-27 125.6 195 40.0
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 7.4e-27 125.2 195 39.5
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 7.4e-27 125.2 152 44.7
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 9.7e-27 124.8 195 40.0
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 9.7e-27 124.8 195 40.0
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 9.7e-27 124.8 195 40.0
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 9.7e-27 124.8 152 40.8
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 1.3e-26 124.4 195 40.5
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.3e-26 124.4 168 41.7
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 1.3e-26 124.4 195 40.0
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 1.6e-26 124.0 149 44.3
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 1.6e-26 124.0 195 40.0
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 1.6e-26 124.0 152 44.1
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 2.2e-26 123.6 195 40.5
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 2.8e-26 123.2 168 42.3
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 2.8e-26 123.2 174 41.4
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 2.8e-26 123.2 149 44.3
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 2.8e-26 123.2 195 40.0
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 3.7e-26 122.9 195 39.5
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 3.7e-26 122.9 151 45.0
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 3.7e-26 122.9 151 45.0
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 4.8e-26 122.5 152 43.4
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 4.8e-26 122.5 195 38.5
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 6.3e-26 122.1 195 39.0
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 8.2e-26 121.7 149 43.6
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 8.2e-26 121.7 154 44.2
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 8.2e-26 121.7 148 43.2
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 1.1e-25 121.3 152 44.1
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 1.4e-25 120.9 150 48.7
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 1.8e-25 120.6 195 40.0
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.8e-25 120.6 168 42.9
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 4.1e-25 119.4 195 37.9
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 5.3e-25 119.0 195 36.9
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 5.3e-25 119.0 152 42.8
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 6.9e-25 118.6 195 39.5
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 6.9e-25 118.6 151 44.4
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 6.9e-25 118.6 151 45.0
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 6.9e-25 118.6 144 44.4
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 6.9e-25 118.6 195 39.0
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 6.9e-25 118.6 162 43.2
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 9.1e-25 118.2 149 43.0
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 9.1e-25 118.2 197 38.6
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 1.2e-24 117.9 149 45.0
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.2e-24 117.9 162 41.4
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.2e-24 117.9 149 46.3
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 1.5e-24 117.5 149 45.0
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 1.5e-24 117.5 104 57.7
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.0e-24 117.1 149 42.3
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.0e-24 117.1 100 60.0
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 2.0e-24 117.1 149 44.3
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 2.6e-24 116.7 100 59.0
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 3.4e-24 116.3 149 44.3
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 3.4e-24 116.3 149 44.3
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 5.9e-24 115.5 168 40.5
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 7.7e-24 115.2 195 38.5
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 7.7e-24 115.2 152 40.8
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.7e-23 114.0 100 58.0
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 1.7e-23 114.0 168 39.9
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.1e-22 111.3 195 36.9
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 5.5e-22 109.0 144 41.0
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 7.2e-22 108.6 135 44.4
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.2e-21 107.8 107 50.5
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 1.2e-21 107.8 152 37.5
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 1.6e-21 107.5 130 46.9
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 1.0e-20 104.8 130 45.4
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 1.1e-19 101.3 120 48.3
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 5.9e-16 89.0 70 62.9
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 2.9e-15 86.7 152 35.5
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 2.5e-14 83.6 77 54.5
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 4.7e-13 79.3 107 41.1
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 4.4e-11 72.8 97 41.2
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 7.4e-11 72.0 54 64.8
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 1.6e-08 64.3 98 37.8
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 9.4e-06 55.1 96 30.2


User provided reference genes

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