Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.0e-253 879.8 500 100.0
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 6.0e-190 667.9 467 81.8
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 5.8e-153 545.0 479 69.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.7e-67 260.0 491 40.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-65 255.0 481 38.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.3e-64 251.5 479 36.7
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.1e-63 248.4 488 40.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-62 245.0 500 40.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.6e-62 244.6 491 39.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 6.2e-62 242.7 499 35.9
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.1e-61 241.9 491 40.1
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.8e-61 241.1 497 38.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-61 241.1 494 39.7
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.4e-61 240.7 497 40.4
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.1e-61 240.4 497 35.6
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.0e-61 240.0 497 40.4
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 6.8e-61 239.2 502 38.6
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 8.9e-61 238.8 441 42.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.2e-60 238.4 476 39.9
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.6e-60 237.3 495 38.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 4.4e-60 236.5 506 35.2
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.2e-59 234.2 457 35.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.9e-59 233.8 488 38.5
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 4.9e-59 233.0 499 35.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 6.4e-59 232.6 482 39.4
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.1e-58 231.9 478 37.0
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-58 231.9 497 36.6
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.9e-58 231.1 451 39.5
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 4.2e-58 229.9 467 37.5
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 7.1e-58 229.2 488 37.3
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 7.1e-58 229.2 471 35.7
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 7.1e-58 229.2 476 38.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.6e-57 228.0 494 37.4
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.5e-57 226.9 471 39.5
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.0e-57 226.1 449 35.0
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.8e-57 225.7 489 34.8
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.3e-56 224.9 442 38.5
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.7e-56 224.6 470 37.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 6.6e-56 222.6 518 38.2
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 8.7e-56 222.2 474 34.0
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.1e-55 221.9 289 44.3
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.5e-55 221.5 466 39.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.9e-55 221.1 501 34.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.3e-55 220.3 501 34.1
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 4.3e-55 219.9 483 35.2
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 7.3e-55 219.2 495 37.2
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 9.6e-55 218.8 482 37.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.6e-54 218.0 484 38.4
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.6e-54 218.0 454 38.3
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.8e-54 217.2 503 34.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 6.2e-54 216.1 479 34.4
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.1e-53 215.3 498 36.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.1e-53 215.3 466 38.4
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-53 215.3 480 38.8
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.4e-53 214.2 481 33.7
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 2.4e-53 214.2 494 39.3
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.4e-53 214.2 486 34.2
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 3.1e-53 213.8 475 34.9
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 5.3e-53 213.0 496 33.3
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 5.3e-53 213.0 492 32.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 6.9e-53 212.6 503 34.8
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 6.9e-53 212.6 485 37.5
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.9e-53 212.6 468 38.2
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 9.0e-53 212.2 487 33.5
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.2e-52 211.8 488 32.0
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.2e-52 211.8 482 38.2
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 4.4e-52 209.9 480 35.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 9.9e-52 208.8 482 31.7
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 9.9e-52 208.8 500 36.6
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.3e-51 208.4 500 34.6
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.2e-51 207.6 488 31.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 2.2e-51 207.6 457 33.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.9e-51 207.2 480 35.0
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.9e-51 207.2 473 34.2
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 6.4e-51 206.1 475 35.6
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 6.4e-51 206.1 489 35.2
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 6.4e-51 206.1 484 38.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.4e-50 204.9 488 32.2
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.9e-50 204.5 489 31.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-50 204.5 474 35.9
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 4.2e-50 203.4 489 31.9
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.2e-50 203.4 488 34.0
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 9.3e-50 202.2 484 32.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.2e-49 201.8 503 34.0
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.3e-48 197.6 482 31.7
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 3.9e-48 196.8 482 31.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 3.9e-48 196.8 484 31.8
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 5.1e-48 196.4 475 30.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 8.7e-48 195.7 471 34.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 8.7e-48 195.7 494 34.6
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.1e-47 195.3 293 38.9
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.9e-47 194.5 317 37.2
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 3.3e-47 193.7 251 43.0
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 4.3e-47 193.4 522 31.0
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 7.3e-47 192.6 335 38.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.1e-46 191.0 476 32.6
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.8e-45 188.0 439 34.6
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.4e-45 187.6 500 35.0
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.0e-44 184.5 467 36.4
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.7e-43 181.4 518 31.5
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 6.4e-43 179.5 506 31.8
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 9.3e-42 175.6 525 33.7
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 9.3e-42 175.6 325 36.3
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.6e-41 174.9 459 35.1
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.6e-41 173.3 510 29.8
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.0e-40 172.2 344 36.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 8.7e-40 169.1 520 33.8
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.1e-39 168.7 525 33.7
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.9e-39 167.9 292 37.3
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.9e-39 167.9 510 34.3
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.9e-39 167.9 473 34.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 4.3e-39 166.8 519 34.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 4.8e-38 163.3 479 29.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-37 162.2 285 37.2
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 5.8e-36 156.4 301 34.2
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 4.9e-35 153.3 218 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.4e-34 151.8 316 32.3
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.4e-34 151.8 268 36.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.9e-32 143.7 481 29.1
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-31 142.1 349 29.2
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.3e-30 136.3 440 27.5
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.4e-29 134.4 326 31.0
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.9e-28 129.8 480 29.0
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 6.5e-27 126.3 362 32.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 5.5e-26 123.2 303 30.7
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.6e-25 121.7 282 33.0
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 8.7e-24 115.9 487 25.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.2e-18 97.1 168 35.7
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.6e-17 95.1 238 32.4
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.1e-17 93.2 288 25.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 2.3e-16 91.3 142 37.3
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 3.3e-15 87.4 272 37.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.3e-11 75.5 124 38.7
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.9e-11 74.3 166 31.9
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 2.5e-10 71.2 67 52.2
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.5e-10 71.2 67 52.2


User provided reference genes

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