Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb426110 Zea mays HOM05D003597 ORTHO05D004420 2.6e-47 191.8 102 100.0
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 5.9e-36 154.1 100 85.0
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 5.2e-32 141.0 100 80.0
Zm00001eb278990 Zea mays HOM05D003597 ORTHO05D004420 2.8e-25 118.6 97 64.9
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 2.6e-23 112.1 97 61.9
Os06g0209300 Oryza sativa ssp. japonica HOM05D003597 ORTHO05D004420 6.3e-22 107.5 97 59.8
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 2.5e-18 95.5 94 55.3
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.2e-17 93.2 97 53.6
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 3.0e-16 88.6 98 49.0
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 3.0e-16 88.6 97 48.5
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 4.0e-16 88.2 98 48.0
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 5.2e-16 87.8 98 49.0
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 6.8e-16 87.4 97 46.4
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 8.9e-16 87.0 98 42.9
Dinv26719 Davidia involucrata HOM05D003597 ORTHO05D004420 8.9e-16 87.0 98 51.0
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 8.9e-16 87.0 97 48.5
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 2.0e-15 85.9 98 48.0
HPP92_004120 Vanilla planifolia HOM05D003597 ORTHO05D004420 2.6e-15 85.5 100 45.0
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 3.4e-15 85.1 98 48.0
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 4.4e-15 84.7 98 51.0
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 4.4e-15 84.7 98 51.0
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 7.5e-15 84.0 97 44.3
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 7.5e-15 84.0 97 44.3
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 7.5e-15 84.0 98 49.0
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 1.3e-14 83.2 97 48.5
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 1.7e-14 82.8 99 46.5
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 1.7e-14 82.8 98 46.9
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.7e-14 82.8 97 48.5
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.7e-14 82.8 97 48.5
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 2.9e-14 82.0 98 46.9
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 2.9e-14 82.0 98 46.9
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 2.9e-14 82.0 98 46.9
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 2.9e-14 82.0 98 45.9
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 2.9e-14 82.0 98 51.0
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 2.9e-14 82.0 97 50.5
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 3.7e-14 81.6 98 44.9
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 3.7e-14 81.6 98 44.9
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 3.7e-14 81.6 98 45.9
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 4.9e-14 81.3 98 43.9
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 6.4e-14 80.9 98 46.9
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 6.4e-14 80.9 98 45.9
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 6.4e-14 80.9 98 50.0
CAN.G255.17 Capsicum annuum HOM05D003597 ORTHO05D004420 8.3e-14 80.5 80 52.5
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 8.3e-14 80.5 97 46.4
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 8.3e-14 80.5 98 45.9
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 8.3e-14 80.5 97 47.4
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 1.1e-13 80.1 98 46.9
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 1.1e-13 80.1 98 45.9
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 1.4e-13 79.7 98 43.9
Actinidia27024 Actinidia chinensis HOM05D003597 ORTHO05D004420 2.4e-13 79.0 102 47.1
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 2.4e-13 79.0 98 45.9
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 2.4e-13 79.0 98 46.9
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 4.1e-13 78.2 98 45.9
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 4.1e-13 78.2 97 45.4
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 4.1e-13 78.2 97 45.4
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 4.1e-13 78.2 97 45.4
Psat5g134160 Pisum sativum HOM05D003597 ORTHO05D004420 4.1e-13 78.2 98 44.9
Haze_00524 Corylus avellana HOM05D003597 ORTHO05D004420 5.4e-13 77.8 98 45.9
Hma1.2p1_0221F.1_g093170 Hydrangea macrophylla HOM05D003597 ORTHO05D004420 5.4e-13 77.8 98 42.9
FAN08G0909 Fragaria x ananassa HOM05D003597 ORTHO05D004420 7.0e-13 77.4 98 44.9
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 7.0e-13 77.4 98 42.9
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 7.0e-13 77.4 98 44.9
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 9.2e-13 77.0 98 40.8
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 9.2e-13 77.0 75 50.7
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 1.2e-12 76.6 99 42.4
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 1.6e-12 76.3 101 44.6
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.6e-12 76.3 97 45.4
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.6e-12 76.3 98 45.9
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 1.6e-12 76.3 98 45.9
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 2.0e-12 75.9 97 44.3
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.7e-12 75.5 98 45.9
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 2.7e-12 75.5 97 45.4
CiPaw.06G024800 Carya illinoinensis HOM05D003597 ORTHO05D004420 3.5e-12 75.1 97 44.3
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 3.5e-12 75.1 93 46.2
SEGI_09945 Sequoiadendron giganteum HOM05D003597 ORTHO05D004420 4.6e-12 74.7 98 44.9
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 7.8e-12 73.9 98 41.8
SMO351G0114 Selaginella moellendorffii HOM05D003597 ORTHO05D004420 1.3e-11 73.2 97 47.4
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 1.7e-11 72.8 100 40.0
CDE10G1110 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 1.7e-11 72.8 93 45.2
Lsat_1_v5_gn_4_129001 Lactuca sativa HOM05D000021 ORTHO05D000010 1.7e-11 72.8 93 44.1
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 2.3e-11 72.4 100 42.0
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 3.0e-11 72.0 98 38.8
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 6.6e-11 70.9 98 38.8
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 1.1e-10 70.1 63 46.0
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 1.5e-10 69.7 97 41.2
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 1.9e-10 69.3 75 48.0
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 1.9e-10 69.3 75 48.0
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.5e-10 68.9 98 37.8
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 2.5e-10 68.9 93 45.2
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 2.5e-10 68.9 63 54.0
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 2.5e-10 68.9 97 42.3
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 3.3e-10 68.6 71 46.5
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 5.6e-10 67.8 97 40.2
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 7.3e-10 67.4 71 45.1
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 9.5e-10 67.0 72 47.2
Pp3c11_12900 Physcomitrium patens HOM05D003597 ORTHO05D004420 9.5e-10 67.0 94 46.8
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 9.5e-10 67.0 70 48.6
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 1.2e-09 66.6 74 48.6
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 1.2e-09 66.6 98 38.8
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 1.2e-09 66.6 97 40.2
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 1.2e-09 66.6 63 50.8
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 1.6e-09 66.2 63 50.8
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.6e-09 66.2 72 48.6
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.8e-09 65.5 68 48.5
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.8e-09 65.5 68 50.0
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 2.8e-09 65.5 69 46.4
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 3.6e-09 65.1 75 46.7
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 3.6e-09 65.1 97 40.2
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 3.6e-09 65.1 75 46.7
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 3.6e-09 65.1 75 44.0
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 4.7e-09 64.7 74 47.3
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 4.7e-09 64.7 74 47.3
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 4.7e-09 64.7 74 47.3
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 6.2e-09 64.3 75 46.7
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 6.2e-09 64.3 75 46.7
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 6.2e-09 64.3 75 46.7
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 6.2e-09 64.3 98 38.8
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 8.0e-09 63.9 69 43.5
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 1.1e-08 63.5 98 38.8
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 1.8e-08 62.8 74 47.3
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 1.8e-08 62.8 74 47.3
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 1.8e-08 62.8 65 44.6
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 2.3e-08 62.4 98 36.7
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 3.1e-08 62.0 73 43.8
Manes.02G158699 Manihot esculenta HOM05D003597 ORTHO05D004420 4.0e-08 61.6 67 43.3
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 4.0e-08 61.6 62 46.8
Aqoxy5G02506 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 8.9e-08 60.5 68 48.5
CDE06G0857 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 8.9e-08 60.5 60 58.3
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 1.5e-07 59.7 65 41.5
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 1.5e-07 59.7 66 40.9
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 1.5e-07 59.7 61 45.9
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 3.4e-07 58.5 98 35.7
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 3.4e-07 58.5 62 41.9
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 4.4e-07 58.2 60 38.3
SHI31223 Sapria himalayana HOM05D003597 ORTHO05D004420 4.4e-07 58.2 74 52.7
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 5.8e-07 57.8 60 41.7
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 8.3e-06 53.9 110 32.7


User provided reference genes

Program Settings