Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb411890 Zea mays HOM05D001282 ORTHO05D445682 4.7e-262 907.5 520 100.0
Zm00001eb348740 Zea mays HOM05D001282 ORTHO05D001236 5.3e-16 90.1 50 90.0
Zm00001eb289300 Zea mays HOM05D001282 ORTHO05D001236 2.2e-14 84.7 41 100.0
Zm00001eb146270 Zea mays HOM05D001282 ORTHO05D001236 3.1e-08 64.3 52 61.5
CiPaw.15G083300 Carya illinoinensis HOM05D001282 ORTHO05D001236 4.1e-08 63.9 52 59.6
Os05g0430300 Oryza sativa ssp. japonica HOM05D001282 ORTHO05D001236 5.4e-08 63.5 49 65.3
Prupe.8G052300 Prunus persica HOM05D001282 ORTHO05D001236 7.0e-08 63.2 52 59.6
CSS0014311 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 9.1e-08 62.8 52 59.6
Zm00001eb366560 Zea mays HOM05D001282 ORTHO05D001236 9.1e-08 62.8 52 59.6
PSO170G2937 Papaver somniferum HOM05D001282 ORTHO05D001236 1.6e-07 62.0 53 56.6
PSO782G4055 Papaver somniferum HOM05D001282 ORTHO05D001236 1.6e-07 62.0 53 56.6
TWI34G0755 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 2.0e-07 61.6 52 55.8
Zm00001eb222040 Zea mays HOM05D000071 ORTHO05D000029 2.0e-07 61.6 29 96.6
MD05G1039900 Malus domestica HOM05D001282 ORTHO05D001236 2.7e-07 61.2 52 59.6
MD10G1045400 Malus domestica HOM05D001282 ORTHO05D001236 2.7e-07 61.2 52 59.6
MD12G1057900 Malus domestica HOM05D001282 ORTHO05D001236 2.7e-07 61.2 52 59.6
Atru.chr13.1849 Acer truncatum HOM05D001282 ORTHO05D001236 3.5e-07 60.8 52 57.7
AUR62023586 Chenopodium quinoa HOM05D001282 ORTHO05D001236 3.5e-07 60.8 52 57.7
FvH4_1g25750 Fragaria vesca HOM05D001282 ORTHO05D001236 3.5e-07 60.8 53 58.5
FAN19G0663 Fragaria x ananassa HOM05D001282 ORTHO05D001236 3.5e-07 60.8 53 58.5
FAN26G2989 Fragaria x ananassa HOM05D001282 ORTHO05D001236 3.5e-07 60.8 53 58.5
FAN28G2612 Fragaria x ananassa HOM05D001282 ORTHO05D001236 3.5e-07 60.8 53 58.5
TWI32G0875 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 3.5e-07 60.8 52 55.8
CSS0047588 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 4.5e-07 60.5 52 57.7
Cc00_g07180 Coffea canephora HOM05D001282 ORTHO05D001236 4.5e-07 60.5 52 57.7
Rhsim06G0098800 Rhododendron simsii HOM05D001282 ORTHO05D001236 4.5e-07 60.5 52 57.7
vmacro12505 Vaccinium macrocarpon HOM05D001282 ORTHO05D001236 4.5e-07 60.5 52 57.7
Duzib177G0296 Durio zibethinus HOM05D001282 ORTHO05D001236 5.9e-07 60.1 52 55.8
Lj7C301G2 Lonicera japonica HOM05D001282 ORTHO05D001236 5.9e-07 60.1 52 57.7
Hund16807 Selenicereus undatus HOM05D001282 ORTHO05D001236 7.7e-07 59.7 52 57.7
Thecc.08G200600 Theobroma cacao HOM05D001282 ORTHO05D001236 7.7e-07 59.7 52 55.8
Dinv41681 Davidia involucrata HOM05D001282 ORTHO05D001236 1.0e-06 59.3 49 59.2
Hma1.2p1_0855F.1_g228995 Hydrangea macrophylla HOM05D001282 ORTHO05D001236 1.0e-06 59.3 52 55.8
QL02p034232 Quercus lobata HOM05D001282 ORTHO05D001236 1.0e-06 59.3 52 55.8
QL10p039259 Quercus lobata HOM05D001282 ORTHO05D001236 1.0e-06 59.3 44 61.4
GSVIVG01034887001 Vitis vinifera HOM05D001282 ORTHO05D001236 1.0e-06 59.3 52 55.8
Psat6g189400 Pisum sativum HOM05D001282 ORTHO05D001236 1.3e-06 58.9 52 55.8
Aqoxy6G00140 Aquilegia oxysepala HOM05D001282 ORTHO05D001236 1.7e-06 58.5 49 59.2
CANSAT25G2305 Cannabis sativa HOM05D001282 ORTHO05D001236 1.7e-06 58.5 52 53.8
FAN23G1868 Fragaria x ananassa HOM05D001282 ORTHO05D001236 1.7e-06 58.5 53 56.6
Ca_10627_v3 Cicer arietinum L. HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 55.8
Glyma.20G174000 Glycine max HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 55.8
Lalb_Chr06g0161921 Lupinus albus HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 55.8
Medtr1g096970 Medicago truncatula HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 55.8
Hund27073 Selenicereus undatus HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 53.8
PGSC0003DMG400009867 Solanum tuberosum HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 57.7
TAR381G0652 Trochodendron aralioides HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 53.8
TAR628G0098 Trochodendron aralioides HOM05D001282 ORTHO05D001236 2.2e-06 58.2 52 55.8
Glyma.10G218000 Glycine max HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 55.8
Gohir.A05G249900 Gossypium hirsutum HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 53.8
Gohir.D02G066600 Gossypium hirsutum HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 53.8
Gohir.D05G251700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 53.8
Gorai.005G075500 Gossypium raimondii HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 53.8
Gorai.009G263100 Gossypium raimondii HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 53.8
Lj5g0007456 Lotus japonicus HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 55.8
Nn5g27829 Nelumbo nucifera HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 55.8
Peaxi162Scf00553g01114 Petunia axillaris HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 57.7
Potri.013G115300 Populus trichocarpa HOM05D001282 ORTHO05D001236 2.9e-06 57.8 55 50.9
VMungo0720G0238 Vigna mungo HOM05D001282 ORTHO05D001236 2.9e-06 57.8 52 55.8
Nn1g08460 Nelumbo nucifera HOM05D001282 ORTHO05D001236 3.8e-06 57.4 52 53.8
Oeu004772.5 Olea europaea HOM05D001282 ORTHO05D001236 3.8e-06 57.4 44 61.4
Oeu030009.1 Olea europaea HOM05D001282 ORTHO05D001236 3.8e-06 57.4 52 53.8
Sabra13G0097500 Salix brachista HOM05D001282 ORTHO05D001236 3.8e-06 57.4 55 50.9
Sc01g0001670 Simmondsia chinensis HOM05D001282 ORTHO05D001236 3.8e-06 57.4 52 53.8
Solyc04g081510.4 Solanum lycopersicum HOM05D001282 ORTHO05D001236 3.8e-06 57.4 52 55.8
Sopen04g035120 Solanum pennellii HOM05D001282 ORTHO05D001236 3.8e-06 57.4 52 55.8
CiPaw.16G062800 Carya illinoinensis HOM05D001282 ORTHO05D001236 5.0e-06 57.0 52 53.8
Haze_17898 Corylus avellana HOM05D001282 ORTHO05D001236 5.0e-06 57.0 44 63.6
Gohir.A02G061200 Gossypium hirsutum HOM05D001282 ORTHO05D001236 5.0e-06 57.0 52 53.8
Gorai.010G121900 Gossypium raimondii HOM05D001282 ORTHO05D001236 5.0e-06 57.0 59 49.2
Lalb_Chr01g0009961 Lupinus albus HOM05D001282 ORTHO05D001236 5.0e-06 57.0 53 52.8
EL10Ac1g00063 Beta vulgaris HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 53.8
CAN.G311.36 Capsicum annuum HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 55.8
Ciclev10000547m.g Citrus clementina HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 51.9
FvH4_2g12350 Fragaria vesca HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 55.8
Phvul.007G088000 Phaseolus vulgaris HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 53.8
Potri.019G085900 Populus trichocarpa HOM05D001282 ORTHO05D001236 6.5e-06 56.6 55 49.1
RcHm_v2.0_Chr6g0272361 Rosa chinensis HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 55.8
TPR.G15711 Trifolium pratense HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 53.8
TAR624G1140 Trochodendron aralioides HOM05D001282 ORTHO05D001236 6.5e-06 56.6 52 53.8
DCAR_014782 Daucus carota HOM05D001282 ORTHO05D001236 8.5e-06 56.2 52 53.8
Duzib116G0685 Durio zibethinus HOM05D001282 ORTHO05D001236 8.5e-06 56.2 52 51.9
Os10g0469700 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 8.5e-06 56.2 28 92.9
TAR536G0006 Trochodendron aralioides HOM05D001282 ORTHO05D001236 8.5e-06 56.2 52 55.8


User provided reference genes

Program Settings