Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001282', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001282' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001282' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001282' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001282' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001282', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001282' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001282' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001282' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001282' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001282', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001282' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001282' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001282' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001282' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001282', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001282' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001282', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '489', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' ) ), 'genes' => array( 'A09p32140' => 'bna', 'A09p35560' => 'bna', 'A10p28090' => 'bna', 'Aa31LG3G17880' => 'aar', 'Aa31LG6G11990' => 'aar', 'Aa31LG6G8400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1413' => 'aag', 'Actinidia01308' => 'ach', 'Actinidia02595' => 'ach', 'Actinidia02596' => 'ach', 'Actinidia15426' => 'ach', 'Actinidia16992' => 'ach', 'Actinidia23318' => 'ach', 'Actinidia25667' => 'ach', 'Actinidia29754' => 'ach', 'Actinidia29755' => 'ach', 'Actinidia37935' => 'ach', 'Ah.00g000200' => 'amhyb', 'Ah.05g177830' => 'amhyb', 'Ah.06g191760' => 'amhyb', 'Ah.11g039760' => 'amhyb', 'AL1G44820' => 'aly', 'AL1G48870' => 'aly', 'AL6G19390' => 'aly', 'Aqoxy2G00782' => 'aox', 'Aqoxy3G03353' => 'aox', 'Aqoxy6G00140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1GC9V5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.96LFE1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMY8LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNG8N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF4G8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF5N5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6P7G9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUJ24G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4C7Y3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W27CY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y1TCZK' => 'arhy', 'AT1G30755' => 'ath', 'AT1G34320' => 'ath', 'AT5G08660' => 'ath', 'ATR1134G016' => 'atr', 'Atru.BG.249.p' => 'acertr', 'Atru.chr1.3396' => 'acertr', 'Atru.chr1.3399' => 'acertr', 'Atru.chr13.1849' => 'acertr', 'AUR62004808' => 'cqu', 'AUR62023586' => 'cqu', 'AUR62033898' => 'cqu', 'AUR62036026' => 'cqu', 'AUR62041901' => 'cqu', 'BcaB04g17882' => 'bca', 'BcaB04g17885' => 'bca', 'BcaB05g21576' => 'bca', 'BcaB05g23957' => 'bca', 'BcaB07g32721' => 'bca', 'BcaB07g32722' => 'bca', 'BcaB07g33134' => 'bca', 'BcaB08g37234' => 'bca', 'BcaC03g13237' => 'bca', 'BcaC05g27095' => 'bca', 'BcaC08g43785' => 'bca', 'BolC2t06328H' => 'bol', 'BolC5t31710H' => 'bol', 'BolC6t36297H' => 'bol', 'BolC9t59577H' => 'bol', 'BraA02t04963Z' => 'bra', 'BraA09t38759Z' => 'bra', 'BraA09t39082Z' => 'bra', 'BraA10t44858Z' => 'bra', 'C02p03690' => 'bna', 'C05p29810' => 'bna', 'C06p11670' => 'bna', 'C09p68290' => 'bna', 'CAN.G199.24' => 'can', 'CAN.G311.36' => 'can', 'CAN.G61.15' => 'can', 'CANSAT01G2011' => 'cansat', 'CANSAT25G1017' => 'cansat', 'CANSAT25G2305' => 'cansat', 'CARHR030220' => 'chi', 'CARHR033780' => 'chi', 'CARHR054970' => 'chi', 'CARHR054980' => 'chi', 'CARHR204320' => 'chi', 'Carub.0001s2905' => 'cru', 'Carub.0001s3246' => 'cru', 'Carub.0006s0765' => 'cru', 'Ca_00836_v3' => 'car', 'Ca_10627_v3' => 'car', 'Ca_13431_v3' => 'car', 'Ca_17013_v3' => 'car', 'Ca_17015_v3' => 'car', 'Ca_17599_v3' => 'car', 'Ca_27945_v3' => 'car', 'CBR_g12489' => 'cbr', 'CBR_g41803' => 'cbr', 'Cc00_g07180' => 'ccan', 'Cc10_g01590' => 'ccan', 'CDE02G3627' => 'cde', 'CDE05G1840' => 'cde', 'CDE05G2610' => 'cde', 'CDE08G1442' => 'cde', 'Cfa013959' => 'cfa', 'Cfa018208' => 'cfa', 'Ciclev10000547m.g' => 'ccl', 'Ciclev10000613m.g' => 'ccl', 'Ciclev10025161m.g' => 'ccl', 'CiPaw.03G114400' => 'cil', 'CiPaw.07G149000' => 'cil', 'CiPaw.15G083300' => 'cil', 'CiPaw.16G062800' => 'cil', 'ClCG08G014250' => 'cla', 'ClCG09G010390' => 'cla', 'COL.COLO4_05835' => 'col', 'COL.COLO4_12131' => 'col', 'COL.COLO4_26138' => 'col', 'COL.COLO4_26139' => 'col', 'Cpa.g.sc26.55' => 'cpa', 'Cpa.g.sc37.69' => 'cpa', 'Cpa.g.sc37.70' => 'cpa', 'Cpa.g.sc66.75' => 'cpa', 'Cpa.g.sc66.77' => 'cpa', 'CsaV3_2G029580' => 'csa', 'CsaV3_7G024220' => 'csa', 'CSS0001460' => 'camsi', 'CSS0014311' => 'camsi', 'CSS0021780' => 'camsi', 'CSS0037559' => 'camsi', 'CSS0038559' => 'camsi', 'CSS0047588' => 'camsi', 'CSS0050392' => 'camsi', 'DCAR_009490' => 'dca', 'DCAR_010069' => 'dca', 'DCAR_013873' => 'dca', 'DCAR_014782' => 'dca', 'DCAR_016724' => 'dca', 'DCAR_028428' => 'dca', 'Dinv05403' => 'din', 'Dinv23356' => 'din', 'Dinv31853' => 'din', 'Dinv39524' => 'din', 'Dinv41681' => 'din', 'Duzib041G0022' => 'dzi', 'Duzib093G1760' => 'dzi', 'Duzib116G0685' => 'dzi', 'Duzib177G0296' => 'dzi', 'Duzib187G0082' => 'dzi', 'ECA233G2702' => 'eca', 'ECA238G0168' => 'eca', 'ECA238G3516' => 'eca', 'ECA240G2380' => 'eca', 'ECA247G3356' => 'eca', 'ECA247G3423' => 'eca', 'EL10Ac1g00063' => 'bvu', 'EL10Ac1g02187' => 'bvu', 'EL10Ac4g08967' => 'bvu', 'Eucgr.E01086' => 'egr', 'Eucgr.F00581' => 'egr', 'Eucgr.F02632' => 'egr', 'Eucgr.F04140' => 'egr', 'Eucgr.F04141' => 'egr', 'Eucgr.H05069' => 'egr', 'FAN15G2243' => 'fan', 'FAN19G0663' => 'fan', 'FAN20G0193' => 'fan', 'FAN20G0602' => 'fan', 'FAN23G1868' => 'fan', 'FAN24G1485' => 'fan', 'FAN24G3448' => 'fan', 'FAN26G2989' => 'fan', 'FAN27G0043' => 'fan', 'FAN27G2795' => 'fan', 'FAN28G2612' => 'fan', 'FvH4_1g25750' => 'fve', 'FvH4_2g12330' => 'fve', 'FvH4_2g12340' => 'fve', 'FvH4_2g12350' => 'fve', 'FvH4_2g38360' => 'fve', 'Glyma.04G023800' => 'gma', 'Glyma.04G206400' => 'gma', 'Glyma.05G196700' => 'gma', 'Glyma.06G024000' => 'gma', 'Glyma.06G159200' => 'gma', 'Glyma.06G159300' => 'gma', 'Glyma.08G004300' => 'gma', 'Glyma.10G218000' => 'gma', 'Glyma.12G161651' => 'gma', 'Glyma.14G219500' => 'gma', 'Glyma.17G258400' => 'gma', 'Glyma.20G174000' => 'gma', 'Gohir.A02G061200' => 'ghi', 'Gohir.A02G093400' => 'ghi', 'Gohir.A05G186300' => 'ghi', 'Gohir.A05G249900' => 'ghi', 'Gohir.A07G207700' => 'ghi', 'Gohir.D02G066600' => 'ghi', 'Gohir.D02G098000' => 'ghi', 'Gohir.D05G189200' => 'ghi', 'Gohir.D05G251700' => 'ghi', 'Gohir.D06G185766' => 'ghi', 'Gohir.D07G213700' => 'ghi', 'Gohir.D08G090333' => 'ghi', 'Gohir.D11G163033' => 'ghi', 'Gorai.001G241600' => 'gra', 'Gorai.005G075500' => 'gra', 'Gorai.005G111800' => 'gra', 'Gorai.009G194400' => 'gra', 'Gorai.009G263100' => 'gra', 'Gorai.010G121900' => 'gra', 'Gorai.010G187600' => 'gra', 'Gorai.010G217600' => 'gra', 'GSVIVG01009920001' => 'vvi', 'GSVIVG01022400001' => 'vvi', 'GSVIVG01034887001' => 'vvi', 'HanXRQChr03g0063941' => 'han', 'HanXRQChr04g0111621' => 'han', 'HanXRQChr05g0158471' => 'han', 'HanXRQChr08g0217701' => 'han', 'HanXRQChr10g0288891' => 'han', 'HanXRQChr11g0324321' => 'han', 'HanXRQChr11g0324461' => 'han', 'HanXRQChr12g0366961' => 'han', 'HanXRQChr13g0387111' => 'han', 'HanXRQChr14g0430431' => 'han', 'Haze_17898' => 'cav', 'Haze_22641' => 'cav', 'Hma1.2p1_0023F.1_g015510' => 'hma', 'Hma1.2p1_0057F.1_g032060' => 'hma', 'Hma1.2p1_0057F.1_g032070' => 'hma', 'Hma1.2p1_0855F.1_g228995' => 'hma', 'Hma1.2p1_2959F.1_g330840' => 'hma', 'HPP92_003133' => 'vpl', 'HPP92_004433' => 'vpl', 'HPP92_004436' => 'vpl', 'HPP92_006858' => 'vpl', 'HPP92_006874' => 'vpl', 'HPP92_009271' => 'vpl', 'HPP92_019376' => 'vpl', 'HPP92_019381' => 'vpl', 'HPP92_019382' => 'vpl', 'Hund05185' => 'sun', 'Hund06894' => 'sun', 'Hund16807' => 'sun', 'Hund27073' => 'sun', 'Lalb_Chr01g0009961' => 'lal', 'Lalb_Chr06g0161921' => 'lal', 'Lalb_Chr07g0184081' => 'lal', 'Lalb_Chr08g0237831' => 'lal', 'Lalb_Chr08g0237841' => 'lal', 'Lalb_Chr11g0061871' => 'lal', 'Lalb_Chr13g0296811' => 'lal', 'Lalb_Chr14g0369931' => 'lal', 'Lalb_Chr21g0305691' => 'lal', 'Lj1g0013699' => 'lja', 'Lj1g0016723' => 'lja', 'Lj4A23G22' => 'lonja', 'Lj4A797G58' => 'lonja', 'Lj4C827T6' => 'lonja', 'Lj4g0020258' => 'lja', 'Lj5g0007456' => 'lja', 'Lj5g0016010' => 'lja', 'Lj7C301G2' => 'lonja', 'Lj7P301T31' => 'lonja', 'Lsat_1_v5_gn_1_8340' => 'lsa', 'Lsat_1_v5_gn_2_39121' => 'lsa', 'Lsat_1_v5_gn_2_9700' => 'lsa', 'Lsat_1_v5_gn_6_39280' => 'lsa', 'Lsat_1_v5_gn_8_30740' => 'lsa', 'Manes.02G190200' => 'mes', 'Manes.05G146500' => 'mes', 'Manes.12G080102' => 'mes', 'Manes.18G013100' => 'mes', 'Manes.18G099200' => 'mes', 'Mapoly0113s0015' => 'mpo', 'MBI09_g04507_MAGBIO' => 'mbi', 'MBI17_g06060_MAGBIO' => 'mbi', 'MBI17_g42326_MAGBIO' => 'mbi', 'MD05G1039900' => 'mdo', 'MD08G1012300' => 'mdo', 'MD10G1045400' => 'mdo', 'MD10G1045600' => 'mdo', 'MD10G1045700' => 'mdo', 'MD10G1045800' => 'mdo', 'MD12G1057900' => 'mdo', 'MD15G1011300' => 'mdo', 'MD15G1140000' => 'mdo', 'Medtr1g025340' => 'mtr', 'Medtr1g096970' => 'mtr', 'Medtr1g096980' => 'mtr', 'Medtr3g097240' => 'mtr', 'Medtr3g114010' => 'mtr', 'Medtr8g095080' => 'mtr', 'MELO3C011017.2' => 'cme', 'MELO3C023672.2' => 'cme', 'Migut.C00846' => 'egut', 'Migut.C01229' => 'egut', 'Migut.H00796' => 'egut', 'MSTRG.1502' => 'ama', 'MSTRG.25254' => 'ama', 'MSTRG.25430' => 'ama', 'Nitab4.5_0000159g0080' => 'nta', 'Nitab4.5_0000337g0090' => 'nta', 'Nitab4.5_0000531g0020' => 'nta', 'Nitab4.5_0002641g0090' => 'nta', 'Nitab4.5_0003251g0030' => 'nta', 'Nitab4.5_0003952g0010' => 'nta', 'Nitab4.5_0006501g0020' => 'nta', 'Nitab4.5_0010710g0020' => 'nta', 'Nitab4.5_0011198g0020' => 'nta', 'Nn1g05915' => 'nnu', 'Nn1g08460' => 'nnu', 'Nn5g27829' => 'nnu', 'Nn5g29106' => 'nnu', 'Oeu004772.5' => 'oeu', 'Oeu007325.2' => 'oeu', 'Oeu014178.4' => 'oeu', 'Oeu030009.1' => 'oeu', 'Oeu054477.3' => 'oeu', 'Oeu056495.1' => 'oeu', 'Oeu061966.1' => 'oeu', 'Os01g0873900' => 'osa', 'Os02g0551700' => 'osa', 'Os04g0433600' => 'osa', 'Os05g0430300' => 'osa', 'Os06g0716000' => 'osa', 'Peaxi162Scf00151g00818' => 'pax', 'Peaxi162Scf00268g01314' => 'pax', 'Peaxi162Scf00400g00105' => 'pax', 'Peaxi162Scf00553g01114' => 'pax', 'PGR031G1400' => 'pgr', 'PGR042G1469' => 'pgr', 'PGR042G1721' => 'pgr', 'PGR042G2935' => 'pgr', 'PGR083G1265' => 'pgr', 'PGR102G2241' => 'pgr', 'PGSC0003DMG400009867' => 'stu', 'PGSC0003DMG400026118' => 'stu', 'PGSC0003DMG400033893' => 'stu', 'Phvul.001G004900' => 'pvu', 'Phvul.002G169900' => 'pvu', 'Phvul.002G277200' => 'pvu', 'Phvul.007G088000' => 'pvu', 'Phvul.009G017500' => 'pvu', 'Phvul.009G156900' => 'pvu', 'Phvul.009G157000' => 'pvu', 'Potri.001G305800' => 'ptr', 'Potri.002G021400' => 'ptr', 'Potri.005G240300' => 'ptr', 'Potri.013G115300' => 'ptr', 'Potri.019G001500' => 'ptr', 'Potri.019G085900' => 'ptr', 'Pp3c14_4570' => 'ppa', 'Pp3c16_15140' => 'ppa', 'Pp3c27_2910' => 'ppa', 'Prupe.1G364500' => 'ppe', 'Prupe.4G285700' => 'ppe', 'Prupe.8G052300' => 'ppe', 'Prupe.8G052600' => 'ppe', 'Psat2g099960' => 'psa', 'Psat5g012800' => 'psa', 'Psat5g057920' => 'psa', 'Psat5g057960' => 'psa', 'Psat5g058000' => 'psa', 'Psat5g219320' => 'psa', 'Psat6g002480' => 'psa', 'Psat6g189400' => 'psa', 'Psat7g042720' => 'psa', 'PSO170G2937' => 'pso', 'PSO541G2900' => 'pso', 'PSO675G8984' => 'pso', 'PSO700G0105' => 'pso', 'PSO782G4055' => 'pso', 'QL02p011731' => 'qlo', 'QL02p034232' => 'qlo', 'QL10p039259' => 'qlo', 'RcHm_v2.0_Chr3g0484671' => 'rch', 'RcHm_v2.0_Chr3g0484691' => 'rch', 'RcHm_v2.0_Chr5g0037881' => 'rch', 'RcHm_v2.0_Chr6g0272351' => 'rch', 'RcHm_v2.0_Chr6g0272361' => 'rch', 'RcHm_v2.0_Chr6g0302951' => 'rch', 'Rhsim01G0002500' => 'rsi', 'Rhsim06G0098800' => 'rsi', 'RhsimUnG0065600' => 'rsi', 'Sabra02G0017700' => 'sbr', 'Sabra05G0185800' => 'sbr', 'Sabra13G0097500' => 'sbr', 'Sabra16G0192100' => 'sbr', 'Sabra19G0005200' => 'sbr', 'Sabra19G0005300' => 'sbr', 'Sabra19G0014700' => 'sbr', 'Sabra19G0096500' => 'sbr', 'SalBow7G1442' => 'sbo', 'SalBow7G3893' => 'sbo', 'SalBow7G4493' => 'sbo', 'Sc01g0001670' => 'sci', 'Sc02g0008610' => 'sci', 'Sc06g0003100' => 'sci', 'Sc26g0001510' => 'sci', 'Sc26g0001530' => 'sci', 'Sc26g0001540' => 'sci', 'Sed0001022' => 'sed', 'Sed0011272' => 'sed', 'Sed0014195' => 'sed', 'Sed0028113' => 'sed', 'SEGI_13148' => 'sgi', 'SEGI_33044' => 'sgi', 'SEGI_38960' => 'sgi', 'SGA_v2.0_scaffold118G32455' => 'sas', 'SGA_v2.0_scaffold211G42148' => 'sas', 'SGA_v2.0_scaffold24G10530' => 'sas', 'SGA_v2.0_scaffold92G28223' => 'sas', 'SGA_v2.0_scaffold92G28225' => 'sas', 'SHI08062' => 'shi', 'SMO146G0008' => 'smo', 'SMO358G0757' => 'smo', 'Solyc04g025210.4' => 'sly', 'Solyc04g081510.4' => 'sly', 'Solyc06g034250.1' => 'sly', 'Solyc06g065460.2' => 'sly', 'Solyc11g017000.2' => 'sly', 'Sopen04g011610' => 'spe', 'Sopen04g035120' => 'spe', 'Sopen06g010890' => 'spe', 'Sopen06g023950' => 'spe', 'Sopen11g009000' => 'spe', 'Sopen11g009010' => 'spe', 'Sp1g26640' => 'spa', 'Sp1g29530' => 'spa', 'Sp6g34200' => 'spa', 'TAR381G0652' => 'tar', 'TAR381G0926' => 'tar', 'TAR381G1397' => 'tar', 'TAR536G0006' => 'tar', 'TAR624G0793' => 'tar', 'TAR624G1140' => 'tar', 'TAR628G0098' => 'tar', 'THA.LOC104806780' => 'tha', 'THA.LOC104809189' => 'tha', 'THA.LOC104818411' => 'tha', 'Thecc.01G143900' => 'tca', 'Thecc.08G045300' => 'tca', 'Thecc.08G200600' => 'tca', 'Thhalv10007023m.g' => 'esa', 'Thhalv10007107m.g' => 'esa', 'Thhalv10012930m.g' => 'esa', 'TPR.G15711' => 'tpr', 'TPR.G15723' => 'tpr', 'TPR.G26424' => 'tpr', 'TPR.G28693' => 'tpr', 'TPR.G33418' => 'tpr', 'TPR.G34553' => 'tpr', 'TWI32G0875' => 'twi', 'TWI34G0755' => 'twi', 'TWI56G1101' => 'twi', 'TWI75G0412' => 'twi', 'TWI79G0185' => 'twi', 'unitig_26.g9881' => 'ugi', 'unitig_32.g11224' => 'ugi', 'unitig_52.g17584' => 'ugi', 'unitig_749.g13895' => 'ugi', 'vmacro04355' => 'vma', 'vmacro12505' => 'vma', 'vmacro12506' => 'vma', 'vmacro13137' => 'vma', 'vmacro13138' => 'vma', 'vmacro22894' => 'vma', 'VMungo0251G0052' => 'vmu', 'VMungo0251G1921' => 'vmu', 'VMungo0540G1305' => 'vmu', 'VMungo0647G0560' => 'vmu', 'VMungo0647G2069' => 'vmu', 'VMungo0720G0238' => 'vmu', 'VMungo0720G2369' => 'vmu', 'VMungo1309G1555' => 'vmu', 'VMungo1309G2351' => 'vmu', 'VMungo1309G2759' => 'vmu', 'VMungo1383G3209' => 'vmu', 'Zm00001eb082630' => 'zma', 'Zm00001eb146270' => 'zma', 'Zm00001eb228090' => 'zma', 'Zm00001eb243500' => 'zma', 'Zm00001eb272300' => 'zma', 'Zm00001eb289300' => 'zma', 'Zm00001eb348740' => 'zma', 'Zm00001eb366560' => 'zma', 'Zm00001eb411890' => 'zma', 'Zm00001eb422670' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001282' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001282' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001282' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001282' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151