Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 0.0e+00 1253.0 630 100.0
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 2.0e-227 792.7 627 62.0
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 3.5e-227 792.0 630 61.6
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 4.5e-227 791.6 626 62.0
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 2.5e-225 785.8 634 60.3
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 4.4e-222 775.0 626 59.9
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 5.7e-222 774.6 630 61.0
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 2.2e-221 772.7 625 60.8
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 3.7e-221 771.9 630 60.5
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 3.7e-221 771.9 627 60.6
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 1.8e-220 769.6 622 61.4
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 3.1e-220 768.8 626 59.4
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 7.0e-220 767.7 625 61.3
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 9.1e-220 767.3 623 60.2
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 1.6e-219 766.5 627 60.8
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 2.0e-219 766.1 624 59.9
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 2.6e-219 765.8 627 60.4
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 3.5e-219 765.4 627 60.8
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 1.0e-218 763.8 626 59.9
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 2.2e-218 762.7 626 59.7
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 5.0e-218 761.5 625 61.3
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 6.5e-218 761.1 622 59.8
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 1.1e-217 760.4 629 59.5
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 2.5e-217 759.2 634 59.8
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 3.2e-217 758.8 623 60.5
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 5.5e-217 758.1 670 56.6
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 7.2e-217 757.7 630 60.2
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 1.2e-216 756.9 628 59.7
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 2.7e-216 755.7 622 60.0
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 2.7e-216 755.7 622 60.0
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 3.6e-216 755.4 622 60.6
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 4.7e-216 755.0 630 59.4
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 6.1e-216 754.6 628 59.6
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 6.1e-216 754.6 622 59.3
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 1.4e-215 753.4 624 59.6
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 5.2e-215 751.5 627 60.1
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 5.2e-215 751.5 624 60.1
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 8.8e-215 750.7 630 59.0
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 3.4e-214 748.8 629 58.3
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 3.4e-214 748.8 628 58.8
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 7.5e-214 747.7 624 59.3
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 7.5e-214 747.7 624 59.9
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 1.3e-213 746.9 641 59.0
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 1.7e-213 746.5 629 58.2
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 2.2e-213 746.1 632 59.7
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 2.8e-213 745.7 631 58.8
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 2.4e-212 742.7 598 61.4
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 4.1e-212 741.9 624 59.3
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 5.4e-212 741.5 631 58.5
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 7.0e-212 741.1 625 60.6
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 9.1e-212 740.7 624 59.0
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 9.1e-212 740.7 630 58.7
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 1.6e-211 740.0 631 57.8
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 2.0e-211 739.6 651 57.3
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 3.8e-210 735.3 638 58.3
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 1.1e-209 733.8 631 59.0
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 4.2e-209 731.9 631 59.1
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 7.2e-209 731.1 608 59.9
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 1.6e-208 729.9 615 59.5
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 2.1e-208 729.6 602 59.1
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 4.7e-208 728.4 626 56.9
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 6.1e-208 728.0 631 59.0
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.0e-207 727.2 631 58.6
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 2.3e-207 726.1 590 61.7
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 5.2e-207 724.9 629 56.6
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 8.8e-207 724.2 628 56.5
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 2.0e-206 723.0 630 55.7
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 2.0e-206 723.0 617 58.3
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 2.6e-206 722.6 628 56.7
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 1.3e-205 720.3 632 57.1
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 2.2e-205 719.5 626 56.9
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 4.9e-205 718.4 630 57.0
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 4.9e-205 718.4 630 57.0
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 1.8e-204 716.5 660 56.5
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 3.1e-204 715.7 631 57.2
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 3.5e-203 712.2 645 56.3
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 1.0e-202 710.7 609 58.8
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 1.3e-202 710.3 627 56.3
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 1.1e-201 707.2 631 56.4
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 2.5e-201 706.1 592 58.8
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 7.2e-201 704.5 626 56.5
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 8.0e-200 701.0 589 59.3
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 1.4e-199 700.3 629 56.8
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 4.4e-198 695.3 573 60.0
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 5.0e-194 681.8 569 58.9
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 1.5e-193 680.2 585 58.3
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 1.4e-188 663.7 561 57.6
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 9.2e-188 661.0 625 54.9
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 3.6e-176 622.5 603 52.9
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 5.2e-167 592.0 629 49.6
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 2.7e-163 579.7 633 47.1
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 8.1e-160 568.2 494 58.3
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 2.4e-159 566.6 451 61.2
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 5.8e-158 562.0 645 46.8
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 2.9e-157 559.7 451 61.0
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 3.8e-157 559.3 440 63.4
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 6.4e-149 531.9 601 47.8
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 6.4e-149 531.9 418 62.2
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 4.5e-142 509.2 634 44.8
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 7.6e-134 481.9 399 58.4
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 7.7e-126 455.3 397 57.2
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 7.2e-124 448.7 417 54.9
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 5.0e-101 372.9 777 32.4
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 6.3e-96 355.9 423 48.7
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 7.7e-94 349.0 602 36.2
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 2.1e-75 287.7 177 79.7
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 8.0e-75 285.8 278 55.4
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.5e-41 175.3 149 52.3
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 7.6e-41 172.9 180 48.3
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 4.6e-30 137.1 211 38.9
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 1.0e-29 136.0 163 46.6
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 1.3e-27 129.0 77 72.7
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 1.9e-20 105.1 76 67.1
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 1.8e-13 82.0 54 64.8
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 1.3e-08 65.9 111 41.4
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 4.2e-07 60.8 38 60.5


User provided reference genes

Program Settings