Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.3e-219 766.5 522 100.0
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.9e-146 523.5 558 69.2
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.5e-84 316.6 333 58.6
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.8e-41 173.3 286 41.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.0e-38 163.3 317 38.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 5.0e-38 163.3 307 39.1
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.6e-36 158.3 304 35.9
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 2.7e-36 157.5 313 37.4
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.6e-36 157.1 288 38.2
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 3.6e-36 157.1 275 42.2
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 4.7e-36 156.8 326 37.1
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 6.1e-36 156.4 325 34.8
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 8.0e-36 156.0 289 39.1
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.0e-35 155.6 288 37.8
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.4e-35 155.2 292 38.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.4e-35 155.2 304 35.5
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.8e-35 154.8 288 37.5
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 3.0e-35 154.1 290 38.3
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.2e-35 153.3 330 36.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.2e-35 153.3 288 37.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-34 151.8 278 41.4
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.3e-34 150.6 288 36.8
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.3e-34 150.6 333 34.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.3e-33 148.7 281 38.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.2e-33 147.9 320 37.8
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.2e-33 147.9 288 37.5
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.8e-33 146.7 347 35.2
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.8e-32 144.8 278 40.6
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.1e-32 143.7 297 36.7
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 9.1e-32 142.5 300 37.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 9.1e-32 142.5 284 39.4
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.0e-31 141.4 328 33.8
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 2.0e-31 141.4 289 38.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.6e-31 141.0 336 32.7
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.6e-31 141.0 304 37.2
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 5.9e-31 139.8 299 37.1
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 7.7e-31 139.4 310 36.1
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.0e-30 139.0 281 38.4
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-30 139.0 294 37.1
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.7e-30 138.3 288 36.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.8e-30 137.1 313 36.4
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.8e-30 137.1 303 35.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 5.0e-30 136.7 288 34.7
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.5e-29 134.4 297 35.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.5e-29 134.4 287 34.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 3.2e-29 134.0 322 35.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.2e-29 134.0 320 32.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.1e-28 131.3 297 34.7
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.1e-28 131.3 288 34.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 2.7e-28 131.0 297 35.0
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.7e-28 131.0 333 32.7
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 3.6e-28 130.6 285 35.4
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 8.0e-28 129.4 292 35.6
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.4e-27 128.6 297 35.0
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.4e-27 128.6 231 39.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.3e-27 127.9 283 36.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 5.2e-27 126.7 277 36.1
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 5.2e-27 126.7 281 36.7
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 2.6e-26 124.4 332 33.7
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.6e-26 124.4 290 34.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 3.4e-26 124.0 325 31.1
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 5.7e-26 123.2 250 36.4
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 7.5e-26 122.9 334 32.3
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 9.8e-26 122.5 318 34.0
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 9.8e-26 122.5 261 37.5
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.7e-25 121.7 300 34.7
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.7e-25 121.7 279 35.1
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.2e-25 121.3 282 35.1
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.2e-25 121.3 257 37.7
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.2e-25 121.3 279 35.1
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 8.3e-25 119.4 277 36.1
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.1e-24 119.0 334 32.3
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.4e-24 118.6 283 35.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.8e-24 118.2 288 34.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 3.1e-24 117.5 314 33.4
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 4.1e-24 117.1 278 34.2
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.0e-24 116.3 228 38.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 9.1e-24 115.9 273 35.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.2e-23 115.5 289 33.9
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.6e-23 115.2 210 41.0
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 5.9e-23 113.2 233 37.3
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 5.9e-23 113.2 260 35.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 5.9e-23 113.2 269 34.6
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.7e-22 111.7 287 33.4
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.2e-22 111.3 277 32.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 2.9e-22 110.9 331 31.7
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.8e-22 110.5 267 34.8
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.0e-22 110.2 252 36.5
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 5.0e-22 110.2 323 30.7
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 9.4e-21 105.9 298 33.9
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.1e-20 104.8 242 33.5
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.7e-20 103.6 221 37.6
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.4e-19 102.1 220 36.4
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 2.3e-19 101.3 302 30.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 5.2e-19 100.1 201 39.3
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 5.2e-19 100.1 296 32.1
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.0e-18 98.2 243 37.0
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.6e-18 97.8 291 29.6
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 4.4e-18 97.1 209 37.3
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 5.7e-18 96.7 296 31.8
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.7e-17 95.1 210 35.7
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.2e-17 94.7 296 32.1
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 6.3e-17 93.2 348 30.7
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 8.3e-17 92.8 262 31.7
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.4e-16 92.0 266 30.5
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 9.1e-16 89.4 133 40.6
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.6e-15 88.6 217 36.4
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 7.7e-15 86.3 338 26.9
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-13 82.4 110 44.5
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.4e-11 75.5 116 37.9
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.3e-11 74.7 281 28.8
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.8e-11 73.2 146 37.7
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.2e-10 72.4 310 26.1
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 7.5e-10 69.7 317 24.0
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.7e-09 67.4 82 39.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.0e-07 61.6 149 38.3
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 5.9e-07 60.1 90 33.3
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.8e-07 59.7 87 43.7
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.7e-06 58.5 110 45.5
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.9e-06 57.4 75 36.0
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.0e-06 57.0 69 36.2


User provided reference genes

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