Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 3.5e-55 218.0 108 100.0
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 6.7e-46 187.2 109 91.7
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 5.7e-37 157.5 106 75.5
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 7.2e-24 114.0 100 66.0
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.7e-23 112.1 99 67.7
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 7.9e-23 110.5 98 61.2
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.4e-22 109.8 91 64.8
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.8e-22 109.4 95 65.3
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.8e-22 109.4 99 62.6
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.3e-22 109.0 86 67.4
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.3e-22 109.0 94 66.0
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-22 108.6 100 63.0
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-22 108.6 100 63.0
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-22 108.6 100 63.0
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.9e-22 108.2 85 68.2
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.9e-22 108.2 85 68.2
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.7e-22 107.5 85 67.1
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 6.7e-22 107.5 95 64.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 8.8e-22 107.1 99 62.6
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 8.8e-22 107.1 100 63.0
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.1e-21 106.7 94 63.8
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.0e-21 105.9 91 62.6
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 2.0e-21 105.9 104 61.5
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.6e-21 105.5 99 63.6
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 5.7e-21 104.4 86 68.6
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 7.4e-21 104.0 85 67.1
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 7.4e-21 104.0 94 63.8
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 9.7e-21 103.6 85 65.9
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.3e-20 103.2 96 62.5
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.2e-20 102.4 89 61.8
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 2.2e-20 102.4 91 62.6
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 2.8e-20 102.1 89 64.0
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 4.8e-20 101.3 99 61.6
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 6.3e-20 100.9 80 66.2
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 8.2e-20 100.5 91 61.5
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 8.2e-20 100.5 91 61.5
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.1e-19 100.1 95 61.1
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.4e-19 99.8 94 61.7
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.4e-19 99.8 94 61.7
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.8e-19 99.4 87 63.2
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.8e-19 99.4 85 64.7
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.4e-19 99.0 89 61.8
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.4e-19 99.0 94 61.7
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 3.1e-19 98.6 94 62.8
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.1e-19 98.6 85 63.5
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 5.3e-19 97.8 94 62.8
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 6.9e-19 97.4 99 57.6
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.2e-18 96.7 97 58.8
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 60.7
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 60.7
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 60.7
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 60.7
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 60.7
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 61.8
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.5e-18 96.3 89 61.8
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.5e-18 96.3 94 60.6
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.0e-18 95.9 94 60.6
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.0e-18 95.9 94 60.6
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.6e-18 95.5 89 61.8
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 2.6e-18 95.5 89 61.8
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 3.4e-18 95.1 89 60.7
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 4.5e-18 94.7 96 60.4
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 4.5e-18 94.7 81 64.2
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 4.5e-18 94.7 89 60.7
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 4.5e-18 94.7 94 57.4
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 5.9e-18 94.4 101 56.4
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 5.9e-18 94.4 94 60.6
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.0e-17 93.6 94 59.6
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.3e-17 93.2 87 62.1
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.3e-17 93.2 94 58.5
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.3e-17 93.2 94 57.4
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.3e-17 93.2 94 58.5
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 1.3e-17 93.2 80 61.2
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.3e-17 93.2 94 59.6
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.2e-17 92.4 85 60.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.8e-17 91.7 79 63.3
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 3.8e-17 91.7 80 66.2
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 5.0e-17 91.3 94 58.5
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 6.5e-17 90.9 94 57.4
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 8.5e-17 90.5 89 58.4
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 8.5e-17 90.5 133 44.4
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.9e-16 89.4 98 59.2
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 4.2e-16 88.2 149 41.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.7e-15 85.5 100 55.0
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 3.6e-15 85.1 105 50.5
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 3.6e-15 85.1 69 63.8
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.0e-14 83.6 85 61.2
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.3e-14 82.4 69 60.9
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 6.3e-12 74.3 92 52.2
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.1e-11 73.6 73 61.6
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.8e-11 72.8 164 36.6
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.1e-11 72.0 67 62.7
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.2e-10 70.1 70 61.4
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 5.9e-10 67.8 91 50.5
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.3e-09 66.6 55 63.6
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 2.2e-09 65.9 69 60.9
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.8e-09 65.1 55 65.5
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 8.5e-09 63.9 50 66.0
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.9e-08 62.8 66 60.6
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 3.2e-08 62.0 50 66.0
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.2e-08 62.0 50 68.0
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.4e-06 56.6 71 53.5


User provided reference genes

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