Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb403320 Zea mays HOM05D004347 ORTHO05D005270 9.2e-136 486.9 243 100.0
Zm00001eb188330 Zea mays HOM05D004347 ORTHO05D005270 4.5e-90 335.1 207 81.6
PGR031G1892 Punica granatum HOM05D004347 ORTHO05D005270 3.1e-83 312.4 207 75.4
Zm00001eb252020 Zea mays HOM05D004347 ORTHO05D005270 1.5e-82 310.1 197 79.7
TAR376G0652 Trochodendron aralioides HOM05D004347 ORTHO05D005270 5.8e-82 308.1 207 73.4
Os02g0704800 Oryza sativa ssp. japonica HOM05D004347 ORTHO05D005270 3.8e-81 305.4 207 75.4
Duzib093G0814 Durio zibethinus HOM05D004347 ORTHO05D005270 6.4e-81 304.7 207 73.9
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 1.9e-80 303.1 207 72.9
Rhsim07G0240900 Rhododendron simsii HOM05D004347 ORTHO05D005270 3.2e-80 302.4 250 62.4
RhsimUnG0052000 Rhododendron simsii HOM05D004347 ORTHO05D005270 3.2e-80 302.4 250 62.4
TAR628G1165 Trochodendron aralioides HOM05D004347 ORTHO05D005270 3.2e-80 302.4 207 72.5
MBI18_g10579_MAGBIO Magnolia biondii HOM05D004347 ORTHO05D005270 5.5e-80 301.6 206 72.3
Gorai.009G200700 Gossypium raimondii HOM05D004347 ORTHO05D005270 9.3e-80 300.8 207 72.9
Potri.005G229400 Populus trichocarpa HOM05D004347 ORTHO05D005270 9.3e-80 300.8 207 72.5
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 1.2e-79 300.4 207 71.5
Manes.05G157200 Manihot esculenta HOM05D004347 ORTHO05D005270 1.2e-79 300.4 207 72.0
CDE02G4169 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 1.6e-79 300.1 207 72.0
Ah.08g222650 Amaranthus hybridus HOM05D004347 ORTHO05D005270 2.7e-79 299.3 207 72.5
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 2.7e-79 299.3 207 72.9
ECA233G5914 Erigeron canadensis HOM05D004347 ORTHO05D005270 2.7e-79 299.3 207 72.5
Prupe.1G376500 Prunus persica HOM05D004347 ORTHO05D005270 2.7e-79 299.3 207 71.5
AUR62015395 Chenopodium quinoa HOM05D004347 ORTHO05D005270 3.5e-79 298.9 207 72.0
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 3.5e-79 298.9 207 72.0
CSS0031902 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 4.6e-79 298.5 207 72.0
CSS0033638 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 4.6e-79 298.5 207 72.0
Lj1g0017536 Lotus japonicus HOM05D004347 ORTHO05D005270 4.6e-79 298.5 201 74.1
MD15G1024200 Malus domestica HOM05D004347 ORTHO05D005270 4.6e-79 298.5 207 72.5
Hund03153 Selenicereus undatus HOM05D004347 ORTHO05D005270 4.6e-79 298.5 207 72.5
CDE06G1278 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 6.0e-79 298.1 207 71.5
AUR62002295 Chenopodium quinoa HOM05D004347 ORTHO05D005270 6.0e-79 298.1 207 71.5
Glyma.04G030500 Glycine max HOM05D004347 ORTHO05D005270 6.0e-79 298.1 201 73.6
Lsat_1_v5_gn_6_14781 Lactuca sativa HOM05D004347 ORTHO05D005270 6.0e-79 298.1 207 72.5
Thecc.08G030400 Theobroma cacao HOM05D004347 ORTHO05D005270 6.0e-79 298.1 207 72.0
Nitab4.5_0004802g0040 Nicotiana tabacum HOM05D004347 ORTHO05D005270 7.9e-79 297.7 206 71.8
Glyma.06G030600 Glycine max HOM05D004347 ORTHO05D005270 1.0e-78 297.4 201 73.1
Nitab4.5_0001091g0050 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.0e-78 297.4 206 72.3
PSO210G5717 Papaver somniferum HOM05D004347 ORTHO05D005270 1.0e-78 297.4 207 71.0
Gohir.D05G195800 Gossypium hirsutum HOM05D004347 ORTHO05D005270 1.3e-78 297.0 207 72.0
Peaxi162Scf00064g00534 Petunia axillaris HOM05D004347 ORTHO05D005270 1.3e-78 297.0 206 71.8
RcHm_v2.0_Chr6g0301371 Rosa chinensis HOM05D004347 ORTHO05D005270 1.3e-78 297.0 207 71.0
CSS0015335 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 1.8e-78 296.6 207 70.5
TWI56G0865 Tripterygium wilfordii HOM05D004347 ORTHO05D005270 1.8e-78 296.6 207 71.5
Actinidia29814 Actinidia chinensis HOM05D004347 ORTHO05D005270 2.3e-78 296.2 207 71.5
ATR0568G211 Amborella trichopoda HOM05D004347 ORTHO05D005270 2.3e-78 296.2 201 72.6
Gohir.A05G192600 Gossypium hirsutum HOM05D004347 ORTHO05D005270 2.3e-78 296.2 207 72.0
Lalb_Chr14g0369401 Lupinus albus HOM05D004347 ORTHO05D005270 2.3e-78 296.2 206 72.3
DCAR_022470 Daucus carota HOM05D004347 ORTHO05D005270 3.0e-78 295.8 207 71.5
FAN15G0129 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.0e-78 295.8 207 70.5
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.0e-78 295.8 207 70.5
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 3.0e-78 295.8 207 70.0
vmacro04537 Vaccinium macrocarpon HOM05D004347 ORTHO05D005270 3.0e-78 295.8 207 70.0
VMungo1309G0178 Vigna mungo HOM05D004347 ORTHO05D005270 3.9e-78 295.4 201 73.6
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 5.1e-78 295.0 207 69.6
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 5.1e-78 295.0 207 71.0
CsaV3_3G045350 Cucumis sativus L. HOM05D004347 ORTHO05D005270 5.1e-78 295.0 206 70.4
PGSC0003DMG400003741 Solanum tuberosum HOM05D004347 ORTHO05D005270 5.1e-78 295.0 206 69.9
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 5.1e-78 295.0 186 80.6
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 1.1e-77 293.9 207 71.0
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 1.1e-77 293.9 207 70.0
HanXRQChr05g0152041 Helianthus annuus HOM05D004347 ORTHO05D005270 1.1e-77 293.9 207 70.5
Sabra05G0177200 Salix brachista HOM05D004347 ORTHO05D005270 1.1e-77 293.9 207 71.5
CAN.G847.3 Capsicum annuum HOM05D004347 ORTHO05D005270 1.5e-77 293.5 206 70.9
Ciclev10001509m.g Citrus clementina HOM05D004347 ORTHO05D005270 1.5e-77 293.5 207 70.0
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 1.5e-77 293.5 207 69.6
MD08G1028500 Malus domestica HOM05D004347 ORTHO05D005270 1.5e-77 293.5 207 72.0
Medtr3g112050 Medicago truncatula HOM05D004347 ORTHO05D005270 1.5e-77 293.5 206 71.8
Ca_15501_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 1.9e-77 293.1 206 71.8
Lalb_Chr24g0398901 Lupinus albus HOM05D004347 ORTHO05D005270 1.9e-77 293.1 206 70.9
FvH4_2g39540 Fragaria vesca HOM05D004347 ORTHO05D005270 2.5e-77 292.7 207 70.5
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 2.5e-77 292.7 206 69.9
Oeu031257.1 Olea europaea HOM05D004347 ORTHO05D005270 2.5e-77 292.7 207 70.0
Solyc04g080610.3 Solanum lycopersicum HOM05D004347 ORTHO05D005270 2.5e-77 292.7 206 69.9
Sopen04g034200 Solanum pennellii HOM05D004347 ORTHO05D005270 2.5e-77 292.7 206 69.9
Sopen12g031090 Solanum pennellii HOM05D004347 ORTHO05D005270 2.5e-77 292.7 206 70.9
PGSC0003DMG400015463 Solanum tuberosum HOM05D004347 ORTHO05D005270 2.5e-77 292.7 206 70.9
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 4.3e-77 292.0 207 71.0
EL10Ac3g05924 Beta vulgaris HOM05D004347 ORTHO05D005270 5.6e-77 291.6 206 71.4
SGA_v2.0_scaffold1G00165 Striga asiatica HOM05D004347 ORTHO05D005270 5.6e-77 291.6 207 68.6
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 7.4e-77 291.2 207 69.1
Psat5g016520 Pisum sativum HOM05D004347 ORTHO05D005270 9.6e-77 290.8 206 71.4
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 1.3e-76 290.4 207 68.1
CANSAT11G1506 Cannabis sativa HOM05D004347 ORTHO05D005270 1.3e-76 290.4 207 69.6
Solyc12g089210.2 Solanum lycopersicum HOM05D004347 ORTHO05D005270 1.6e-76 290.0 206 70.4
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 2.1e-76 289.7 206 69.4
Phvul.009G059600 Phaseolus vulgaris HOM05D004347 ORTHO05D005270 2.8e-76 289.3 201 72.1
Sed0020994 Sechium edule HOM05D004347 ORTHO05D005270 2.8e-76 289.3 206 69.4
BcaB02g07020 Brassica carinata HOM05D004347 ORTHO05D005270 3.7e-76 288.9 207 69.1
BcaC08g45584 Brassica carinata HOM05D004347 ORTHO05D005270 3.7e-76 288.9 207 69.1
A07p28900 Brassica napus HOM05D004347 ORTHO05D005270 3.7e-76 288.9 207 69.1
C06p32680 Brassica napus HOM05D004347 ORTHO05D005270 3.7e-76 288.9 207 69.1
BolC6t38392H Brassica oleracea HOM05D004347 ORTHO05D005270 3.7e-76 288.9 207 69.1
Sp5g30470 Schrenkiella parvula HOM05D004347 ORTHO05D005270 4.8e-76 288.5 207 69.1
THA.LOC104811378 Tarenaya hassleriana HOM05D004347 ORTHO05D005270 4.8e-76 288.5 207 68.6
Atru.chr13.439 Acer truncatum HOM05D004347 ORTHO05D005270 6.2e-76 288.1 202 70.8
PSO063G7652 Papaver somniferum HOM05D004347 ORTHO05D005270 6.2e-76 288.1 207 69.1
Hma1.2p1_0203F.1_g086150 Hydrangea macrophylla HOM05D004347 ORTHO05D005270 8.2e-76 287.7 207 70.0
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 1.1e-75 287.3 207 69.1
CiPaw.07G159300 Carya illinoinensis HOM05D004347 ORTHO05D005270 1.8e-75 286.6 206 69.4
ClCG05G018820 Citrullus lanatus HOM05D004347 ORTHO05D005270 2.4e-75 286.2 225 64.0
Thhalv10018722m.g Eutrema salsugineum HOM05D004347 ORTHO05D005270 2.4e-75 286.2 207 68.6
SEGI_09245 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 2.4e-75 286.2 202 68.3
SEGI_25489 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 2.4e-75 286.2 202 68.3
CARHR068670 Cardamine hirsuta HOM05D004347 ORTHO05D005270 4.0e-75 285.4 207 68.6
Nitab4.5_0008031g0060 Nicotiana tabacum HOM05D004347 ORTHO05D005270 4.0e-75 285.4 206 67.5
Aa31LG4G5540 Aethionema arabicum HOM05D004347 ORTHO05D005270 5.3e-75 285.0 207 68.1
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 6.9e-75 284.6 207 68.1
unitig_8.g4581 Utricularia gibba HOM05D004347 ORTHO05D005270 9.0e-75 284.3 206 68.4
AL2G35250 Arabidopsis lyrata HOM05D004347 ORTHO05D005270 1.2e-74 283.9 207 67.1
AT1G75330 Arabidopsis thaliana HOM05D004347 ORTHO05D005270 2.6e-74 282.7 206 68.0
Carub.0002s2216 Capsella rubella HOM05D004347 ORTHO05D005270 2.6e-74 282.7 206 68.4
Nn5g29661 Nelumbo nucifera HOM05D004347 ORTHO05D005270 4.5e-74 282.0 177 78.5
Sc15g0007070 Simmondsia chinensis HOM05D004347 ORTHO05D005270 4.5e-74 282.0 197 71.1
Nitab4.5_0003265g0100 Nicotiana tabacum HOM05D004347 ORTHO05D005270 5.8e-74 281.6 206 66.5
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 1.0e-73 280.8 197 70.6
HPP92_000284 Vanilla planifolia HOM05D004347 ORTHO05D005270 1.7e-73 280.0 202 66.8
SMO298G0050 Selaginella moellendorffii HOM05D004347 ORTHO05D005270 2.2e-73 279.6 201 69.2
MELO3C003814.2 Cucumis melo HOM05D004347 ORTHO05D005270 3.8e-73 278.9 195 70.3
CBR_g28659 Chara braunii HOM05D004347 ORTHO05D005270 3.2e-72 275.8 201 67.7
BcaB05g24901 Brassica carinata HOM05D004347 ORTHO05D005270 7.1e-72 274.6 197 68.0
C02p32480 Brassica napus HOM05D004347 ORTHO05D005270 6.1e-71 271.6 207 65.2
Pp3c9_2740 Physcomitrium patens HOM05D004347 ORTHO05D005270 1.0e-70 270.8 202 66.3
Pp3c9_2745 Physcomitrium patens HOM05D004347 ORTHO05D005270 1.0e-70 270.8 202 66.3
Pp3c15_7070 Physcomitrium patens HOM05D004347 ORTHO05D005270 1.8e-70 270.0 202 65.8
Mapoly0003s0042 Marchantia polymorpha HOM05D004347 ORTHO05D005270 3.0e-70 269.2 202 66.3
Lj5g0006178 Lotus japonicus HOM05D004347 ORTHO05D005270 5.1e-70 268.5 201 65.2
Dinv36108 Davidia involucrata HOM05D004347 ORTHO05D005270 8.7e-70 267.7 235 60.0
BolC2t09280H Brassica oleracea HOM05D004347 ORTHO05D005270 2.5e-69 266.2 207 64.3
arahy.Tifrunner.gnm1.ann1.S41V7E Arachis hypogaea HOM05D004347 ORTHO05D005270 5.7e-69 265.0 281 53.7
arahy.Tifrunner.gnm1.ann1.YLZT45 Arachis hypogaea HOM05D004347 ORTHO05D005270 5.7e-69 265.0 281 53.7
TPR.G20180 Trifolium pratense HOM05D004347 ORTHO05D005270 1.4e-67 260.4 249 54.6
Medtr1g022420 Medicago truncatula HOM05D004347 ORTHO05D005270 4.1e-67 258.8 201 62.7
BcaC03g15560 Brassica carinata HOM05D004347 ORTHO05D005270 2.5e-64 249.6 207 61.8
Zm00001eb216710 Zea mays HOM05D004347 ORTHO05D005270 4.2e-64 248.8 124 96.8
Peaxi162Scf00140g00025 Petunia axillaris HOM05D004347 ORTHO05D005270 1.6e-63 246.9 191 64.9
Zm00001eb001310 Zea mays HOM05D004347 ORTHO05D005270 1.6e-63 246.9 124 95.2
Zm00001eb257230 Zea mays HOM05D004347 ORTHO05D005270 1.6e-63 246.9 124 95.2
Zm00001eb419090 Zea mays HOM05D004347 ORTHO05D005270 1.6e-63 246.9 124 95.2
Psat6g009200 Pisum sativum HOM05D004347 ORTHO05D005270 3.6e-63 245.7 202 59.4
Cre12.g489700 Chlamydomonas reinhardtii HOM05D004347 ORTHO05D005270 6.3e-60 235.0 201 61.2
MCO01G430 Micromonas commoda HOM05D004347 ORTHO05D005270 9.1e-59 231.1 204 56.9
Zm00001eb126200 Zea mays HOM05D004347 ORTHO05D005270 5.9e-58 228.4 112 97.3
PRCOL_00003337 Prasinoderma coloniale HOM05D004347 ORTHO05D005270 3.8e-57 225.7 202 56.9
Lj2A1046T54 Lonicera japonica HOM05D004347 ORTHO05D005270 4.7e-55 218.8 221 53.8
Ah.07g201940 Amaranthus hybridus HOM05D004347 ORTHO05D005270 3.9e-54 215.7 204 55.4
TPR.G13537 Trifolium pratense HOM05D004347 ORTHO05D005270 1.5e-50 203.8 122 79.5
Ah.07g198360 Amaranthus hybridus HOM05D004347 ORTHO05D005270 8.5e-49 198.0 123 77.2
Lj2A915G14 Lonicera japonica HOM05D004347 ORTHO05D005270 4.2e-48 195.7 176 59.1
PSO409G0040 Papaver somniferum HOM05D004347 ORTHO05D005270 1.6e-34 150.6 182 47.8
Actinidia37998 Actinidia chinensis HOM05D004347 ORTHO05D005270 7.7e-34 148.3 184 48.9
CAN.G312.9 Capsicum annuum HOM05D004347 ORTHO05D005270 1.7e-33 147.1 122 62.3
Cfa022292 Carpinus fangiana HOM05D004347 ORTHO05D005270 1.2e-23 114.4 217 34.1
Actinidia27745 Actinidia chinensis HOM05D004347 ORTHO05D005270 4.7e-23 112.5 72 75.0
TPR.G12496 Trifolium pratense HOM05D004347 ORTHO05D005270 8.0e-23 111.7 61 86.9
Lj2A897T24 Lonicera japonica HOM05D004347 ORTHO05D005270 1.3e-20 104.4 58 82.8
Ca_29133_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 5.0e-17 92.4 208 30.8
Zm00001eb416740 Zea mays HOM05D000215 ORTHO05D007108 5.4e-11 72.4 57 66.7
Zm00001eb046930 Zea mays HOM05D000215 ORTHO05D007108 3.9e-09 66.2 54 64.8
Ca_31259_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 5.6e-08 62.4 93 36.6
Haze_26855 Corylus avellana HOM05D000826 ORTHO05D004603 4.0e-06 56.2 99 34.3


User provided reference genes

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