Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 3.7e-91 338.2 172 100.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 3.5e-57 225.3 114 99.1
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 7.6e-36 154.5 134 65.7
Zm00001eb351440 Zea mays HOM05D004725 ORTHO05D443112 2.1e-25 119.8 60 96.7
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 3.7e-22 109.0 102 64.7
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 9.4e-18 94.4 114 54.4
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.6e-15 86.3 96 52.1
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-14 83.6 130 40.8
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.7e-14 83.6 84 59.5
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-14 83.2 137 39.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.2e-14 83.2 87 55.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.2e-14 83.2 130 41.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 2.8e-14 82.8 135 40.0
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.7e-14 82.4 122 41.8
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 6.3e-14 81.6 141 38.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 6.3e-14 81.6 130 40.8
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 6.3e-14 81.6 130 40.8
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 6.3e-14 81.6 130 40.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 6.3e-14 81.6 130 40.8
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 6.3e-14 81.6 130 40.8
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 8.2e-14 81.3 130 41.5
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 8.2e-14 81.3 91 50.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.1e-13 80.9 115 46.1
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.1e-13 80.9 87 54.0
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.1e-13 80.9 87 54.0
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.8e-13 80.1 130 39.2
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.4e-13 79.7 130 40.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 2.4e-13 79.7 136 41.2
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.1e-13 79.3 92 50.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.1e-13 79.0 125 41.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 5.3e-13 78.6 96 52.1
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.3e-13 78.6 85 54.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 5.3e-13 78.6 87 51.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.9e-13 78.2 85 54.1
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.2e-12 77.4 138 37.7
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.2e-12 77.4 87 52.9
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.2e-12 77.4 77 55.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.5e-12 77.0 91 49.5
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.5e-12 77.0 85 50.6
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.5e-12 77.0 87 51.7
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.5e-12 77.0 88 50.0
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.5e-12 77.0 85 50.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.5e-12 77.0 132 41.7
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.5e-12 77.0 87 52.9
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.5e-12 77.0 87 51.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.5e-12 77.0 87 51.7
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 2.0e-12 76.6 102 49.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.0e-12 76.6 130 39.2
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.6e-12 76.3 125 40.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.6e-12 76.3 130 40.8
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.4e-12 75.9 124 41.9
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 3.4e-12 75.9 84 52.4
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.4e-12 75.9 126 40.5
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.5e-12 75.5 90 51.1
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 4.5e-12 75.5 139 39.6
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 4.5e-12 75.5 103 48.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 4.5e-12 75.5 99 47.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 5.9e-12 75.1 90 51.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 5.9e-12 75.1 104 47.1
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 7.7e-12 74.7 85 50.6
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 7.7e-12 74.7 124 41.1
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.0e-11 74.3 92 47.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.0e-11 74.3 110 41.8
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.0e-11 74.3 77 53.2
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.3e-11 73.9 85 52.9
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.3e-11 73.9 124 41.9
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.3e-11 73.9 85 50.6
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.7e-11 73.6 82 52.4
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.7e-11 73.6 85 49.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.7e-11 73.6 85 49.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.7e-11 73.6 87 51.7
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.7e-11 73.6 115 43.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.7e-11 73.6 88 47.7
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.7e-11 73.6 92 50.0
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-11 73.2 85 51.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-11 73.2 85 51.8
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.2e-11 73.2 134 36.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.9e-11 72.8 103 48.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.9e-11 72.8 103 47.6
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.8e-11 72.4 130 36.9
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.8e-11 72.4 87 52.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.0e-11 72.0 82 51.2
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 5.0e-11 72.0 90 52.2
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 5.0e-11 72.0 85 51.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.0e-11 72.0 92 50.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 5.0e-11 72.0 89 46.1
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 8.5e-11 71.2 92 45.7
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 8.5e-11 71.2 93 52.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 8.5e-11 71.2 131 41.2
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.1e-10 70.9 130 36.2
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.1e-10 70.9 138 37.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.1e-10 70.9 91 46.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.9e-10 70.1 77 48.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.9e-10 70.1 84 48.8
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.5e-10 69.7 77 54.5
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.5e-10 69.7 77 54.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.5e-10 69.7 90 51.1
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.2e-10 69.3 83 49.4
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 4.2e-10 68.9 88 46.6
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 4.2e-10 68.9 77 51.9
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.2e-10 68.9 87 51.7
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.5e-10 68.6 88 48.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 5.5e-10 68.6 88 45.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 5.5e-10 68.6 125 40.8
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 7.2e-10 68.2 90 47.8
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 9.4e-10 67.8 85 44.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.2e-09 67.4 88 46.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.6e-09 67.0 77 49.4
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 3.6e-09 65.9 85 44.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.7e-09 65.5 85 49.4
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.7e-09 65.5 97 40.2
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 4.7e-09 65.5 90 46.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.8e-08 63.5 111 37.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.9e-08 62.4 80 48.8
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.1e-07 60.8 85 44.7
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.8e-06 55.5 132 34.8


User provided reference genes

Program Settings