Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 2.8e-59 231.9 126 100.0
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 2.8e-59 231.9 126 100.0
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 2.8e-59 231.9 126 100.0
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 2.3e-58 228.8 126 97.6
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 4.4e-57 224.6 126 92.9
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 2.9e-56 221.9 121 96.7
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 3.7e-56 221.5 119 100.0
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 1.1e-55 219.9 118 100.0
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 1.1e-55 219.9 118 100.0
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 1.9e-44 182.6 127 79.5
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 6.4e-32 141.0 76 93.4
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 2.1e-22 109.4 126 50.0
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 2.7e-22 109.0 131 48.9
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 1.3e-21 106.7 129 51.2
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 3.0e-21 105.5 126 47.6
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 3.9e-21 105.1 129 49.6
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 6.6e-21 104.4 129 49.6
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 1.1e-20 103.6 126 49.2
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 1.9e-20 102.8 128 49.2
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 1.9e-20 102.8 131 50.4
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 1.9e-20 102.8 128 49.2
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 3.3e-20 102.1 127 48.0
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 4.3e-20 101.7 130 50.8
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 4.3e-20 101.7 130 50.8
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 4.3e-20 101.7 128 46.9
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 4.3e-20 101.7 130 50.8
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 4.3e-20 101.7 128 46.1
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 4.3e-20 101.7 131 47.3
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 4.3e-20 101.7 125 45.6
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 5.6e-20 101.3 126 48.4
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 7.3e-20 100.9 129 48.1
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 9.6e-20 100.5 130 49.2
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 9.6e-20 100.5 126 45.2
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 1.3e-19 100.1 130 50.0
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.3e-19 100.1 126 46.8
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 1.3e-19 100.1 129 51.9
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 1.6e-19 99.8 131 48.9
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 1.6e-19 99.8 125 44.8
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 1.6e-19 99.8 132 48.5
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.6e-19 99.8 130 47.7
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 2.1e-19 99.4 136 46.3
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 2.1e-19 99.4 136 46.3
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 2.8e-19 99.0 130 46.9
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 2.8e-19 99.0 130 46.9
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 2.8e-19 99.0 129 46.5
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 3.6e-19 98.6 128 46.9
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 3.6e-19 98.6 125 44.8
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.6e-19 98.6 128 47.7
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 4.8e-19 98.2 129 49.6
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 4.8e-19 98.2 127 47.2
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 6.2e-19 97.8 126 46.8
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 6.2e-19 97.8 128 47.7
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 6.2e-19 97.8 127 44.1
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 8.1e-19 97.4 125 45.6
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 8.1e-19 97.4 128 48.4
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 8.1e-19 97.4 128 48.4
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 8.1e-19 97.4 140 44.3
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 8.1e-19 97.4 133 46.6
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 8.1e-19 97.4 131 45.8
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 1.1e-18 97.1 131 46.6
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 1.1e-18 97.1 133 46.6
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 1.1e-18 97.1 131 45.8
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 1.1e-18 97.1 133 46.6
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.4e-18 96.7 133 45.1
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.4e-18 96.7 128 48.4
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 1.4e-18 96.7 131 46.6
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 1.8e-18 96.3 126 46.0
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 1.8e-18 96.3 131 45.8
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 1.8e-18 96.3 136 44.9
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.8e-18 96.3 131 45.0
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 2.4e-18 95.9 127 46.5
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 2.4e-18 95.9 128 49.2
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 2.4e-18 95.9 128 49.2
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 3.1e-18 95.5 127 47.2
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 4.0e-18 95.1 132 44.7
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 4.0e-18 95.1 126 45.2
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 4.0e-18 95.1 137 43.1
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 4.0e-18 95.1 137 43.1
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 5.3e-18 94.7 126 46.0
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 5.3e-18 94.7 126 46.0
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 5.3e-18 94.7 129 44.2
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 5.3e-18 94.7 141 44.0
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 5.3e-18 94.7 135 45.2
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 5.3e-18 94.7 130 44.6
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 5.3e-18 94.7 133 43.6
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 9.0e-18 94.0 133 43.6
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 9.0e-18 94.0 131 46.6
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 1.2e-17 93.6 132 46.2
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 1.2e-17 93.6 129 48.1
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 1.2e-17 93.6 133 42.9
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 1.2e-17 93.6 134 44.0
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.5e-17 93.2 128 46.1
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 1.5e-17 93.2 135 44.4
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 2.0e-17 92.8 129 44.2
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 3.4e-17 92.0 130 46.9
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 3.4e-17 92.0 130 46.9
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 4.4e-17 91.7 130 45.4
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 4.4e-17 91.7 134 43.3
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 5.8e-17 91.3 138 44.2
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 5.8e-17 91.3 127 46.5
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 5.8e-17 91.3 126 49.2
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 5.8e-17 91.3 131 44.3
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 9.9e-17 90.5 134 42.5
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.7e-16 89.7 126 44.4
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 1.7e-16 89.7 126 46.0
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 1.7e-16 89.7 129 41.1
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 1.7e-16 89.7 127 44.1
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 2.2e-16 89.4 127 42.5
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 2.2e-16 89.4 129 48.1
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 2.2e-16 89.4 128 43.8
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 3.8e-16 88.6 133 43.6
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 4.9e-16 88.2 129 43.4
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 4.9e-16 88.2 130 46.2
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 4.9e-16 88.2 138 43.5
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 4.9e-16 88.2 129 48.1
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 4.9e-16 88.2 126 39.7
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 8.4e-16 87.4 130 48.5
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 8.4e-16 87.4 131 42.7
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.1e-15 87.0 124 44.4
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 1.1e-15 87.0 132 44.7
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.1e-15 87.0 132 44.7
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.1e-15 87.0 132 44.7
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.1e-15 87.0 132 44.7
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 1.1e-15 87.0 133 45.1
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.1e-15 87.0 127 43.3
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 1.4e-15 86.7 128 43.8
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.4e-15 86.7 132 44.7
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.4e-15 86.7 132 44.7
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 1.4e-15 86.7 131 40.5
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 2.4e-15 85.9 126 42.9
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 4.2e-15 85.1 128 47.7
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 5.4e-15 84.7 133 41.4
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 5.4e-15 84.7 130 40.8
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 7.1e-15 84.3 126 42.1
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 7.1e-15 84.3 141 40.4
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 7.1e-15 84.3 126 41.3
Hund18634 Selenicereus undatus HOM05D001728 ORTHO05D004321 9.3e-15 84.0 169 36.7
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 2.1e-14 82.8 133 39.8
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 2.7e-14 82.4 134 42.5
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 3.5e-14 82.0 133 41.4
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 6.0e-14 81.3 131 41.2
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 6.0e-14 81.3 131 41.2
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 6.0e-14 81.3 129 38.8
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 1.0e-13 80.5 133 42.1
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 1.7e-13 79.7 121 42.1
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 2.3e-13 79.3 118 43.2
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 3.0e-13 79.0 129 41.1
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 3.9e-13 78.6 131 42.0
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 1.1e-12 77.0 130 43.1
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 1.1e-12 77.0 116 42.2
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 1.5e-12 76.6 126 38.9
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.5e-12 75.9 117 41.0
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 5.6e-12 74.7 114 39.5
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.6e-12 74.7 117 40.2
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 5.6e-12 74.7 117 40.2
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 5.6e-12 74.7 139 40.3
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 9.6e-12 73.9 118 39.8
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 2.1e-11 72.8 125 35.2
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 2.1e-11 72.8 125 35.2
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 6.2e-11 71.2 130 35.4
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 8.1e-11 70.9 66 53.0
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 8.1e-11 70.9 71 56.3
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 1.4e-10 70.1 68 55.9
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.2e-09 67.0 53 67.9
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 2.0e-09 66.2 113 42.5
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 7.6e-09 64.3 56 60.7
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 1.3e-08 63.5 84 42.9
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 2.9e-08 62.4 68 50.0
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 4.2e-07 58.5 54 59.3
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 7.9e-06 54.3 43 65.1


User provided reference genes

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