Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 8.4e-296 1019.6 517 100.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.5e-231 804.3 433 92.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.7e-214 748.0 466 77.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 6.1e-214 747.7 472 76.3
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 8.0e-214 747.3 481 76.7
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.8e-213 746.1 519 71.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 4.0e-213 745.0 477 76.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-212 743.0 514 73.2
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.0e-212 742.7 514 73.2
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.4e-212 741.5 479 75.4
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 4.4e-212 741.5 493 74.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.4e-212 741.5 505 72.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 7.5e-212 740.7 460 78.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.8e-212 740.3 514 72.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 9.8e-212 740.3 467 77.3
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 9.8e-212 740.3 468 77.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.3e-211 740.0 519 71.5
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.7e-211 739.6 482 75.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.2e-211 739.2 502 72.9
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.8e-211 738.8 459 78.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 3.7e-211 738.4 516 71.3
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.9e-211 738.0 502 72.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.9e-211 738.0 461 77.7
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 6.3e-211 737.6 472 76.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.3e-211 737.3 477 75.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.8e-210 736.1 479 74.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.1e-210 735.3 471 76.6
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.1e-210 735.3 453 77.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.1e-210 735.3 507 72.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 3.1e-210 735.3 490 74.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 4.1e-210 734.9 476 76.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.2e-210 733.8 478 74.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 9.2e-210 733.8 491 74.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 9.2e-210 733.8 512 71.5
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.2e-209 733.4 501 72.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-209 733.4 478 75.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.6e-209 733.0 510 71.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.0e-209 732.6 515 71.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.7e-209 732.3 460 77.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.5e-209 731.5 529 70.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.5e-209 731.5 504 71.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.9e-209 731.1 485 73.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.8e-209 730.7 515 70.9
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 7.8e-209 730.7 477 75.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.8e-209 730.7 494 73.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.8e-209 730.7 463 77.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.3e-208 729.9 515 70.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.7e-208 729.6 496 74.2
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.7e-208 729.6 481 74.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.3e-208 729.2 472 75.8
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.9e-208 728.8 453 77.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.9e-208 728.8 522 69.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.8e-208 728.4 485 73.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 5.0e-208 728.0 460 77.2
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.3e-207 724.9 461 76.4
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.6e-207 724.5 493 72.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 7.3e-207 724.2 482 74.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.6e-206 723.0 463 75.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.6e-206 723.0 530 69.1
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 6.1e-206 721.1 456 77.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.0e-206 720.7 476 72.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 8.0e-206 720.7 474 73.8
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.4e-205 719.9 507 70.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-205 719.9 515 71.3
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.8e-205 719.5 476 73.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.3e-205 719.2 469 74.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.0e-205 718.8 459 75.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 8.9e-205 717.2 460 75.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.5e-204 716.5 482 73.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.6e-204 715.7 526 69.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.4e-204 714.9 511 70.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.5e-204 714.1 473 72.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-203 713.4 526 69.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.9e-203 711.4 471 72.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 8.3e-203 710.7 463 74.1
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.1e-202 710.3 473 72.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.1e-202 710.3 477 72.3
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-202 709.9 491 70.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-202 709.5 518 69.3
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.4e-202 709.1 479 74.5
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.2e-202 708.8 514 69.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 4.1e-202 708.4 506 70.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 7.0e-202 707.6 471 72.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.0e-202 707.6 461 74.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-201 706.8 515 68.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.2e-201 706.8 475 73.1
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.6e-201 706.4 471 72.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.8e-201 704.1 496 70.6
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.8e-201 704.1 502 70.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.7e-200 703.0 517 68.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.7e-200 703.0 532 66.9
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.7e-200 703.0 453 74.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.0e-200 702.2 478 72.4
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 5.0e-200 701.4 512 68.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 8.6e-200 700.7 512 68.2
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.5e-199 699.9 481 71.7
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 7.3e-199 697.6 527 67.9
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.1e-198 696.0 491 69.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.1e-198 696.0 511 68.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 8.0e-198 694.1 531 67.6
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.2e-195 686.0 562 64.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.0e-194 681.0 472 69.7
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 7.0e-194 681.0 461 71.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.0e-192 675.6 473 71.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.1e-191 673.7 471 69.2
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-190 670.2 487 66.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.4e-188 662.1 489 66.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 3.7e-187 658.7 470 70.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.7e-184 649.8 462 68.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.9e-184 648.7 457 71.8
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.5e-183 646.0 457 69.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.6e-182 642.1 420 74.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.1e-178 627.9 405 75.6
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.3e-175 617.8 472 68.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.6e-174 616.7 453 64.2
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.8e-174 615.9 382 78.8
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-173 613.6 382 78.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 5.2e-173 611.7 385 77.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.6e-169 600.1 371 77.6
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.5e-169 599.0 477 63.7
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.8e-166 589.3 373 75.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 4.8e-166 588.6 388 75.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-164 583.2 473 64.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.5e-161 572.4 478 62.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.4e-157 559.7 476 60.7
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.4e-157 559.7 732 45.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 7.6e-156 554.7 466 63.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 5.1e-152 542.0 354 76.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.5e-143 513.1 408 64.7
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 3.3e-111 406.4 370 59.7
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-104 384.4 238 77.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-101 374.8 270 70.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.4e-95 353.2 293 60.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.3e-91 341.3 459 41.6
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.0e-88 330.1 254 68.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 8.9e-88 328.6 486 39.3
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.9e-85 320.9 462 39.4
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.5e-82 311.2 201 76.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 9.9e-71 271.9 225 61.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 9.6e-58 228.8 131 81.7
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.2e-57 228.4 383 38.4
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.6e-52 211.5 165 65.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.3e-51 207.6 165 65.5
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.3e-51 207.6 164 62.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 7.3e-50 202.6 196 55.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.5e-44 183.7 98 88.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.3e-42 177.2 381 31.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.8e-41 173.3 249 41.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.6e-39 167.5 124 63.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-34 151.4 133 53.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 5.6e-34 149.8 117 64.1
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 8.2e-33 146.0 90 80.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.7e-30 138.3 80 80.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-27 128.6 93 71.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-26 125.2 100 61.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.5e-26 124.4 74 78.4
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.5e-26 124.4 117 57.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.3e-26 124.0 124 52.4
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-25 122.1 297 29.3
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 3.9e-11 73.9 43 74.4
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.4e-10 70.5 61 60.7
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-08 65.1 56 53.6
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 5.3e-08 63.5 228 28.5
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 9.1e-08 62.8 228 28.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 9.1e-08 62.8 36 72.2
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 1.5e-07 62.0 225 27.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.5e-07 60.8 35 74.3
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 1.0e-06 59.3 223 26.5
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.3e-06 58.9 38 73.7
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 3.8e-06 57.4 228 26.8
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.0e-06 57.0 34 73.5
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 8.5e-06 56.2 219 27.9


User provided reference genes

Program Settings