Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb392620 Zea mays HOM05D002085 ORTHO05D002103 6.2e-79 297.4 146 100.0
Zm00001eb084970 Zea mays HOM05D002085 ORTHO05D002103 5.4e-75 284.3 146 95.9
Os04g0395900 Oryza sativa ssp. japonica HOM05D002085 ORTHO05D002103 3.5e-58 228.4 146 77.4
ATR0582G077 Amborella trichopoda HOM05D002085 ORTHO05D002103 5.9e-29 131.3 132 54.5
Migut.O00349 Erythranthe guttata HOM05D002085 ORTHO05D002103 2.2e-28 129.4 140 48.6
Manes.14G046200 Manihot esculenta HOM05D002085 ORTHO05D002103 1.4e-27 126.7 136 49.3
HPP92_023091 Vanilla planifolia HOM05D002085 ORTHO05D002103 1.4e-27 126.7 141 45.4
Atru.chr6.1896 Acer truncatum HOM05D002085 ORTHO05D002103 4.2e-27 125.2 133 51.1
Cc04_g09410 Coffea canephora HOM05D002085 ORTHO05D002103 5.5e-27 124.8 134 50.7
Actinidia08902 Actinidia chinensis HOM05D002085 ORTHO05D002103 4.7e-26 121.7 131 48.1
Thecc.03G138100 Theobroma cacao HOM05D002085 ORTHO05D002103 6.1e-26 121.3 133 49.6
TAR622G1337 Trochodendron aralioides HOM05D002085 ORTHO05D002103 6.1e-26 121.3 134 50.7
CDE06G1763 Ceratophyllum demersum HOM05D002085 ORTHO05D002103 7.9e-26 120.9 136 49.3
MELO3C026172.2 Cucumis melo HOM05D002085 ORTHO05D002103 1.0e-25 120.6 134 51.5
CsaV3_1G000170 Cucumis sativus L. HOM05D002085 ORTHO05D002103 1.0e-25 120.6 134 51.5
Dinv11222 Davidia involucrata HOM05D002085 ORTHO05D002103 1.4e-25 120.2 133 47.4
Duzib205G0469 Durio zibethinus HOM05D002085 ORTHO05D002103 1.4e-25 120.2 136 49.3
Nn4g22180 Nelumbo nucifera HOM05D002085 ORTHO05D002103 1.4e-25 120.2 141 48.2
GSVIVG01004931001 Vitis vinifera HOM05D002085 ORTHO05D002103 3.0e-25 119.0 142 46.5
Dinv09215 Davidia involucrata HOM05D002085 ORTHO05D002103 3.9e-25 118.6 140 47.1
QL10p001008 Quercus lobata HOM05D002085 ORTHO05D002103 3.9e-25 118.6 141 42.6
ECA232G2131 Erigeron canadensis HOM05D002085 ORTHO05D002103 8.8e-25 117.5 134 44.8
vmacro16747 Vaccinium macrocarpon HOM05D002085 ORTHO05D002103 1.5e-24 116.7 141 43.3
Ciclev10031219m.g Citrus clementina HOM05D002085 ORTHO05D002103 2.0e-24 116.3 131 48.9
Oeu030641.2 Olea europaea HOM05D002085 ORTHO05D002103 2.0e-24 116.3 134 45.5
Cfa009431 Carpinus fangiana HOM05D002085 ORTHO05D002103 2.6e-24 115.9 134 48.5
Potri.012G105000 Populus trichocarpa HOM05D002085 ORTHO05D002103 2.6e-24 115.9 132 47.7
Actinidia30597 Actinidia chinensis HOM05D002085 ORTHO05D002103 3.3e-24 115.5 132 47.7
Peaxi162Scf00171g01029 Petunia axillaris HOM05D002085 ORTHO05D002103 3.3e-24 115.5 136 46.3
CSS0003158 Camellia sinensis var. sinensis HOM05D002085 ORTHO05D002103 4.4e-24 115.2 137 44.5
Duzib068G1277 Durio zibethinus HOM05D002085 ORTHO05D002103 5.7e-24 114.8 133 47.4
SGA_v2.0_scaffold72G24158 Striga asiatica HOM05D002085 ORTHO05D002103 5.7e-24 114.8 134 46.3
CSS0044560 Camellia sinensis var. sinensis HOM05D002085 ORTHO05D002103 7.4e-24 114.4 139 46.0
Gorai.008G210000 Gossypium raimondii HOM05D002085 ORTHO05D002103 7.4e-24 114.4 131 47.3
PGSC0003DMG400019856 Solanum tuberosum HOM05D002085 ORTHO05D002103 7.4e-24 114.4 141 45.4
Rhsim12G0018600 Rhododendron simsii HOM05D002085 ORTHO05D002103 1.3e-23 113.6 141 46.8
AL5G28340 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 1.7e-23 113.2 137 43.8
Carub.0006s2144 Capsella rubella HOM05D002085 ORTHO05D002103 1.7e-23 113.2 138 44.9
CARHR189860 Cardamine hirsuta HOM05D002085 ORTHO05D002103 1.7e-23 113.2 138 47.8
Gohir.A12G193200 Gossypium hirsutum HOM05D002085 ORTHO05D002103 1.7e-23 113.2 131 47.3
COL.COLO4_16700 Corchorus olitorius HOM05D002085 ORTHO05D002103 2.2e-23 112.8 133 45.1
AT5G23690 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 2.8e-23 112.5 138 44.9
PSO017G1089 Papaver somniferum HOM05D002085 ORTHO05D002103 2.8e-23 112.5 131 45.8
Potri.015G104300 Populus trichocarpa HOM05D002085 ORTHO05D002103 2.8e-23 112.5 132 46.2
Haze_07118 Corylus avellana HOM05D002085 ORTHO05D002103 3.7e-23 112.1 140 45.0
Cfa018725 Carpinus fangiana HOM05D002085 ORTHO05D002103 6.3e-23 111.3 141 44.7
PSO478G0961 Papaver somniferum HOM05D002085 ORTHO05D002103 8.2e-23 110.9 130 45.4
AT3G48830 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 1.1e-22 110.5 137 43.1
Carub.0005s1500 Capsella rubella HOM05D002085 ORTHO05D002103 1.1e-22 110.5 137 43.1
Solyc03g097830.3 Solanum lycopersicum HOM05D002085 ORTHO05D002103 1.4e-22 110.2 137 45.3
HanXRQChr09g0273981 Helianthus annuus HOM05D002085 ORTHO05D002103 1.8e-22 109.8 134 43.3
THA.LOC104821535 Tarenaya hassleriana HOM05D002085 ORTHO05D002103 1.8e-22 109.8 131 45.8
Thhalv10010292m.g Eutrema salsugineum HOM05D002085 ORTHO05D002103 2.4e-22 109.4 138 42.0
Sopen03g028570 Solanum pennellii HOM05D002085 ORTHO05D002103 2.4e-22 109.4 137 44.5
AUR62005700 Chenopodium quinoa HOM05D002085 ORTHO05D002103 4.1e-22 108.6 141 44.7
MD06G1133100 Malus domestica HOM05D002085 ORTHO05D002103 4.1e-22 108.6 138 42.8
CiPaw.05G103200 Carya illinoinensis HOM05D002085 ORTHO05D002103 5.3e-22 108.2 135 44.4
Prupe.5G144300 Prunus persica HOM05D002085 ORTHO05D002103 5.3e-22 108.2 138 44.2
QL03p049872 Quercus lobata HOM05D002085 ORTHO05D002103 7.0e-22 107.8 134 47.0
CAN.G637.50 Capsicum annuum HOM05D002085 ORTHO05D002103 9.1e-22 107.5 141 43.3
Rhsim12G0180200 Rhododendron simsii HOM05D002085 ORTHO05D002103 9.1e-22 107.5 144 42.4
AL6G34960 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 1.2e-21 107.1 143 44.8
DCAR_021410 Daucus carota HOM05D002085 ORTHO05D002103 1.2e-21 107.1 140 42.9
Medtr3g498785 Medicago truncatula HOM05D002085 ORTHO05D002103 1.2e-21 107.1 131 45.0
arahy.Tifrunner.gnm1.ann1.46XLY6 Arachis hypogaea HOM05D002085 ORTHO05D002103 2.0e-21 106.3 140 44.3
Nitab4.5_0007491g0010 Nicotiana tabacum HOM05D002085 ORTHO05D002103 2.0e-21 106.3 141 43.3
Sp2g23540 Schrenkiella parvula HOM05D002085 ORTHO05D002103 2.0e-21 106.3 138 44.2
Hund06123 Selenicereus undatus HOM05D002085 ORTHO05D002103 2.0e-21 106.3 147 43.5
arahy.Tifrunner.gnm1.ann1.ZH7W5S Arachis hypogaea HOM05D002085 ORTHO05D002103 2.6e-21 105.9 138 43.5
EL10Ac6g13592 Beta vulgaris HOM05D002085 ORTHO05D002103 2.6e-21 105.9 139 46.0
Nitab4.5_0004728g0100 Nicotiana tabacum HOM05D002085 ORTHO05D002103 2.6e-21 105.9 141 43.3
MD14G1149300 Malus domestica HOM05D002085 ORTHO05D002103 4.5e-21 105.1 131 44.3
CANSAT80G1382 Cannabis sativa HOM05D002085 ORTHO05D002103 5.9e-21 104.8 131 43.5
Potri.003G164400 Populus trichocarpa HOM05D002085 ORTHO05D002103 5.9e-21 104.8 143 40.6
vmacro01029 Vaccinium macrocarpon HOM05D002085 ORTHO05D002103 5.9e-21 104.8 135 46.7
Prupe.5G144000 Prunus persica HOM05D002085 ORTHO05D002103 7.7e-21 104.4 138 44.2
Ah.11g049520 Amaranthus hybridus HOM05D002085 ORTHO05D002103 1.3e-20 103.6 138 46.4
Glyma.08G009000 Glycine max HOM05D002085 ORTHO05D002103 1.3e-20 103.6 134 40.3
Lj4g0005732 Lotus japonicus HOM05D002085 ORTHO05D002103 1.3e-20 103.6 135 40.7
Nitab4.5_0001754g0030 Nicotiana tabacum HOM05D002085 ORTHO05D002103 1.7e-20 103.2 140 41.4
Ah.03g135630 Amaranthus hybridus HOM05D002085 ORTHO05D006555 2.2e-20 102.8 143 43.4
Glyma.05G201500 Glycine max HOM05D002085 ORTHO05D002103 3.8e-20 102.1 134 39.6
Medtr8g099900 Medicago truncatula HOM05D002085 ORTHO05D002103 3.8e-20 102.1 131 43.5
Psat7g038840 Pisum sativum HOM05D002085 ORTHO05D002103 5.0e-20 101.7 136 44.9
FvH4_5g09150 Fragaria vesca HOM05D002085 ORTHO05D002103 6.5e-20 101.3 131 42.0
FAN18G0984 Fragaria x ananassa HOM05D002085 ORTHO05D002103 6.5e-20 101.3 131 42.0
Ca_17580_v3 Cicer arietinum L. HOM05D002085 ORTHO05D002103 8.5e-20 100.9 136 41.9
Nitab4.5_0001782g0040 Nicotiana tabacum HOM05D002085 ORTHO05D002103 8.5e-20 100.9 140 41.4
RcHm_v2.0_Chr7g0189011 Rosa chinensis HOM05D002085 ORTHO05D002103 8.5e-20 100.9 134 44.0
Lj6A836G33 Lonicera japonica HOM05D002085 ORTHO05D002103 1.1e-19 100.5 147 42.2
Phvul.002G283000 Phaseolus vulgaris HOM05D002085 ORTHO05D002103 1.1e-19 100.5 138 39.1
Lalb_Chr08g0237451 Lupinus albus HOM05D002085 ORTHO05D002103 1.4e-19 100.1 133 39.8
PGSC0003DMG400030005 Solanum tuberosum HOM05D002085 ORTHO05D002103 1.4e-19 100.1 139 39.6
TWI36G0753 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 1.4e-19 100.1 139 41.0
BcaNung01847 Brassica carinata HOM05D002085 ORTHO05D002103 1.9e-19 99.8 141 42.6
BcaNung05211 Brassica carinata HOM05D002085 ORTHO05D002103 1.9e-19 99.8 141 42.6
C07p43900 Brassica napus HOM05D002085 ORTHO05D002103 1.9e-19 99.8 141 42.6
BolC7t44918H Brassica oleracea HOM05D002085 ORTHO05D002103 1.9e-19 99.8 141 42.6
CiPaw.11G001700 Carya illinoinensis HOM05D002085 ORTHO05D002103 2.5e-19 99.4 131 42.0
TPR.G12979 Trifolium pratense HOM05D002085 ORTHO05D002103 2.5e-19 99.4 136 42.6
A06p34590 Brassica napus HOM05D002085 ORTHO05D002103 4.2e-19 98.6 142 39.4
BraA06t26387Z Brassica rapa HOM05D002085 ORTHO05D002103 4.2e-19 98.6 142 39.4
Psat5g054360 Pisum sativum HOM05D002085 ORTHO05D002103 4.2e-19 98.6 139 41.0
Ca_16081_v3 Cicer arietinum L. HOM05D002085 ORTHO05D002103 5.5e-19 98.2 142 39.4
FAN13G1306 Fragaria x ananassa HOM05D002085 ORTHO05D002103 5.5e-19 98.2 131 41.2
Lalb_Chr07g0183731 Lupinus albus HOM05D002085 ORTHO05D002103 9.4e-19 97.4 133 42.9
RcHm_v2.0_Chr3g0469071 Rosa chinensis HOM05D002085 ORTHO05D002103 9.4e-19 97.4 134 42.5
Sed0004241 Sechium edule HOM05D002085 ORTHO05D002103 9.4e-19 97.4 134 41.0
Sopen01g005190 Solanum pennellii HOM05D002085 ORTHO05D002103 1.2e-18 97.1 139 38.8
CANSAT01G0009 Cannabis sativa HOM05D002085 ORTHO05D002103 2.1e-18 96.3 139 40.3
FvH4_5g09270 Fragaria vesca HOM05D002085 ORTHO05D002103 2.1e-18 96.3 131 41.2
Solyc01g009670.4 Solanum lycopersicum HOM05D002085 ORTHO05D002103 3.6e-18 95.5 139 38.1
AUR62028855 Chenopodium quinoa HOM05D002085 ORTHO05D002103 4.7e-18 95.1 124 47.6
ECA233G2879 Erigeron canadensis HOM05D002085 ORTHO05D002103 6.1e-18 94.7 136 40.4
Aqoxy3G01834 Aquilegia oxysepala HOM05D002085 ORTHO05D002103 8.0e-18 94.4 139 41.0
Sabra03G0119600 Salix brachista HOM05D002085 ORTHO05D002103 1.0e-17 94.0 134 41.0
HanXRQChr08g0210361 Helianthus annuus HOM05D002085 ORTHO05D002103 1.4e-17 93.6 135 40.7
Gohir.D12G195300 Gossypium hirsutum HOM05D002085 ORTHO05D002103 1.8e-17 93.2 131 42.0
Lj1g0008979 Lotus japonicus HOM05D002085 ORTHO05D002103 1.8e-17 93.2 135 38.5
Aa31LG11G3030 Aethionema arabicum HOM05D002085 ORTHO05D002103 3.0e-17 92.4 137 39.4
Thhalv10007307m.g Eutrema salsugineum HOM05D002085 ORTHO05D002103 3.0e-17 92.4 138 42.0
FAN08G2001 Fragaria x ananassa HOM05D002085 ORTHO05D002103 3.0e-17 92.4 131 39.7
Phvul.009G164400 Phaseolus vulgaris HOM05D002085 ORTHO05D002103 3.9e-17 92.0 134 40.3
Sc10g0010730 Simmondsia chinensis HOM05D002085 ORTHO05D002103 3.9e-17 92.0 116 45.7
Sc10g0010820 Simmondsia chinensis HOM05D002085 ORTHO05D002103 3.9e-17 92.0 116 45.7
Peaxi162Scf00234g00911 Petunia axillaris HOM05D002085 ORTHO05D002103 5.2e-17 91.7 135 41.5
CsaV3_4G002360 Cucumis sativus L. HOM05D002085 ORTHO05D002103 6.7e-17 91.3 134 40.3
ClCG07G011850 Citrullus lanatus HOM05D002085 ORTHO05D002103 8.8e-17 90.9 134 39.6
THA.LOC104812601 Tarenaya hassleriana HOM05D002085 ORTHO05D002103 2.0e-16 89.7 136 35.3
unitig_22.g6257 Utricularia gibba HOM05D002085 ORTHO05D002103 2.0e-16 89.7 132 38.6
Lsat_1_v5_gn_8_147080 Lactuca sativa HOM05D002085 ORTHO05D002103 2.6e-16 89.4 138 40.6
Sp1g24270 Schrenkiella parvula HOM05D002085 ORTHO05D002103 3.3e-16 89.0 138 39.9
Aa31sc300G20 Aethionema arabicum HOM05D002085 ORTHO05D002103 4.4e-16 88.6 133 39.8
EL10Ac5g11321 Beta vulgaris HOM05D002085 ORTHO05D002103 4.4e-16 88.6 121 44.6
Eucgr.G01958 Eucalyptus grandis HOM05D002085 ORTHO05D002103 4.4e-16 88.6 139 38.1
A09p37970 Brassica napus HOM05D002085 ORTHO05D002103 1.7e-15 86.7 136 41.2
C05p26790 Brassica napus HOM05D002085 ORTHO05D002103 1.7e-15 86.7 136 41.2
BolC5t31400H Brassica oleracea HOM05D002085 ORTHO05D002103 1.7e-15 86.7 136 41.2
BraA09t39309Z Brassica rapa HOM05D002085 ORTHO05D002103 1.7e-15 86.7 136 41.2
Haze_12482 Corylus avellana HOM05D002085 ORTHO05D002103 1.7e-15 86.7 118 47.5
PGR083G0388 Punica granatum HOM05D002085 ORTHO05D002103 1.7e-15 86.7 134 38.8
Lj1g0016952 Lotus japonicus HOM05D002085 ORTHO05D002103 2.8e-15 85.9 135 35.6
TWI23G0364 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 2.8e-15 85.9 134 37.3
Lsat_1_v5_gn_4_83980 Lactuca sativa HOM05D002085 ORTHO05D002103 3.7e-15 85.5 142 38.0
Carub.0001s2652 Capsella rubella HOM05D002085 ORTHO05D002103 4.8e-15 85.1 140 36.4
BcaC05g26812 Brassica carinata HOM05D002085 ORTHO05D002103 6.3e-15 84.7 138 39.9
TWI39G1242 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 3.1e-14 82.4 134 41.0
AT1G28090 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 7.0e-14 81.3 138 35.5
CARHR027550 Cardamine hirsuta HOM05D002085 ORTHO05D002103 7.7e-13 77.8 138 35.5
Lj5A89G35 Lonicera japonica HOM05D002085 ORTHO05D002103 7.7e-13 77.8 94 45.7
VMungo0251G2654 Vigna mungo HOM05D002085 ORTHO05D002103 1.0e-12 77.4 95 41.1
AL1G41610 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 1.3e-12 77.0 138 33.3
MELO3C017806.2 Cucumis melo HOM05D002085 ORTHO05D002103 1.3e-12 77.0 135 37.8
CARHR157650 Cardamine hirsuta HOM05D002085 ORTHO05D002103 2.5e-11 72.8 101 39.6
SEGI_21001 Sequoiadendron giganteum HOM05D002085 ORTHO05D002103 1.0e-09 67.4 108 40.7
ClCG06G018260 Citrullus lanatus HOM05D002085 ORTHO05D002103 9.7e-08 60.8 73 46.6
Sabra12G0077400 Salix brachista HOM05D002085 ORTHO05D002103 9.7e-08 60.8 69 46.4
Cpa.g.sc2411.2 Carica papaya HOM05D002085 ORTHO05D002103 7.0e-06 54.7 80 37.5


User provided reference genes

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