Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb392530 Zea mays HOM05D001755 ORTHO05D001665 4.1e-176 621.3 317 100.0
Os03g0391700 Oryza sativa ssp. japonica HOM05D001755 ORTHO05D001665 7.6e-90 334.7 329 64.7
Zm00001eb019090 Zea mays HOM05D001755 ORTHO05D001665 2.8e-76 289.7 333 58.9
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 1.1e-16 91.7 192 38.5
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 9.5e-16 88.6 192 35.9
Sc23g0000580 Simmondsia chinensis HOM05D001755 ORTHO05D001665 4.7e-15 86.3 199 37.2
TAR381G1650 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.3e-14 84.0 204 39.2
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 6.8e-14 82.4 212 34.4
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 1.2e-13 81.6 249 33.7
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 2.6e-13 80.5 203 35.5
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 2.6e-13 80.5 206 37.4
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 1.3e-12 78.2 207 36.7
Manes.02G146900 Manihot esculenta HOM05D001755 ORTHO05D001665 3.7e-12 76.6 199 38.7
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 3.7e-12 76.6 206 37.4
Duzib116G0593 Durio zibethinus HOM05D001755 ORTHO05D001665 4.9e-12 76.3 261 33.7
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 6.4e-12 75.9 191 36.1
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 8.3e-12 75.5 208 34.6
PSO675G6469 Papaver somniferum HOM05D001755 ORTHO05D001665 1.4e-11 74.7 179 35.2
Prupe.1G527600 Prunus persica HOM05D001755 ORTHO05D001665 2.4e-11 73.9 211 35.5
TAR376G0504 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.4e-11 73.9 200 34.0
Ciclev10003472m.g Citrus clementina HOM05D001755 ORTHO05D001665 3.2e-11 73.6 225 35.6
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 4.1e-11 73.2 223 35.0
PSO541G2838 Papaver somniferum HOM05D001755 ORTHO05D001665 4.1e-11 73.2 179 34.1
Sabra02G0081000 Salix brachista HOM05D001755 ORTHO05D001665 4.1e-11 73.2 197 36.0
TAR628G0401 Trochodendron aralioides HOM05D001755 ORTHO05D001665 7.0e-11 72.4 192 35.4
CiPaw.07G168200 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.2e-10 71.6 205 35.1
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 1.2e-10 71.6 262 32.4
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 1.2e-10 71.6 207 36.7
CsaV3_2G030090 Cucumis sativus L. HOM05D001755 ORTHO05D001665 1.6e-10 71.2 190 36.3
CAN.G991.1 Capsicum annuum HOM05D001755 ORTHO05D001665 2.0e-10 70.9 202 34.2
CiPaw.08G054100 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.0e-10 70.9 205 35.1
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 2.0e-10 70.9 206 33.5
Hma1.2p1_0125F.1_g059100 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 2.7e-10 70.5 202 34.2
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 3.5e-10 70.1 199 32.7
PGR042G0850 Punica granatum HOM05D001755 ORTHO05D001665 3.5e-10 70.1 239 34.3
Atru.chr13.1048 Acer truncatum HOM05D001755 ORTHO05D001665 4.6e-10 69.7 140 41.4
Haze_22345 Corylus avellana HOM05D001755 ORTHO05D001665 4.6e-10 69.7 265 32.1
Duzib093G0625 Durio zibethinus HOM05D001755 ORTHO05D001665 5.9e-10 69.3 200 33.5
Lalb_Chr11g0065121 Lupinus albus HOM05D001755 ORTHO05D001665 5.9e-10 69.3 195 35.4
FvH4_5g35810 Fragaria vesca HOM05D001755 ORTHO05D001665 7.8e-10 68.9 216 34.7
Cc10_g15590 Coffea canephora HOM05D001755 ORTHO05D001665 1.0e-09 68.6 193 35.2
FAN13G1646 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.0e-09 68.6 216 33.8
Potri.002G103300 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.0e-09 68.6 202 33.2
Gohir.A06G032636 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.3e-09 68.2 235 35.3
MD08G1192900 Malus domestica HOM05D001755 ORTHO05D001665 1.3e-09 68.2 207 37.2
Cfa013701 Carpinus fangiana HOM05D001755 ORTHO05D001665 1.7e-09 67.8 261 32.6
MELO3C011067.2 Cucumis melo HOM05D001755 ORTHO05D001665 1.7e-09 67.8 191 34.6
QL09p017152 Quercus lobata HOM05D001755 ORTHO05D001665 1.7e-09 67.8 249 31.3
FAN04G1269 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.3e-09 67.4 216 33.8
PGSC0003DMG400012901 Solanum tuberosum HOM05D001755 ORTHO05D001665 2.3e-09 67.4 206 33.5
FAN18G0229 Fragaria x ananassa HOM05D001755 ORTHO05D001665 3.0e-09 67.0 216 34.3
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 3.9e-09 66.6 183 33.9
Gohir.D06G032600 Gossypium hirsutum HOM05D001755 ORTHO05D001665 3.9e-09 66.6 220 35.5
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 5.0e-09 66.2 329 28.9
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 6.6e-09 65.9 213 32.9
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 6.6e-09 65.9 244 29.5
RcHm_v2.0_Chr7g0237511 Rosa chinensis HOM05D001755 ORTHO05D001665 6.6e-09 65.9 265 30.6
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 8.6e-09 65.5 327 28.1
MSTRG.26763 Avicennia marina HOM05D001755 ORTHO05D001665 1.1e-08 65.1 224 33.0
MD15G1381700 Malus domestica HOM05D001755 ORTHO05D001665 1.1e-08 65.1 207 36.2
Gorai.009G279600 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.5e-08 64.7 220 31.8
PGSC0003DMG400002044 Solanum tuberosum HOM05D001755 ORTHO05D001665 1.5e-08 64.7 201 32.3
Potri.005G158100 Populus trichocarpa HOM05D001755 ORTHO05D001665 2.5e-08 63.9 202 32.7
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 3.3e-08 63.5 200 31.5
Sc01g0001030 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.3e-08 63.5 195 33.3
HPP92_027236 Vanilla planifolia HOM05D001755 ORTHO05D001665 3.3e-08 63.5 329 30.1
Actinidia30810 Actinidia chinensis HOM05D001755 ORTHO05D001665 4.3e-08 63.2 144 34.0
Gohir.D05G267500 Gossypium hirsutum HOM05D001755 ORTHO05D001665 5.6e-08 62.8 220 31.8
TWI56G0398 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 5.6e-08 62.8 271 31.4
Solyc04g076030.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 7.3e-08 62.4 206 34.5
Gohir.A05G265300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 9.5e-08 62.0 220 30.9
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 1.2e-07 61.6 200 32.0
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.2e-07 61.6 200 31.0
TWI12G0724 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 1.2e-07 61.6 264 31.1
CAN.G1658.8 Capsicum annuum HOM05D001755 ORTHO05D001665 1.6e-07 61.2 252 31.3
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 1.6e-07 61.2 209 32.5
Lalb_Chr08g0242361 Lupinus albus HOM05D001755 ORTHO05D001665 2.1e-07 60.8 213 31.9
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.1e-07 60.8 249 29.7
Sopen04g029980 Solanum pennellii HOM05D001755 ORTHO05D001665 3.6e-07 60.1 206 33.5
Aqoxy5G01330 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 8.0e-07 58.9 186 31.2
Eucgr.F00406 Eucalyptus grandis HOM05D001755 ORTHO05D001665 8.0e-07 58.9 194 33.5
Hma1.2p1_0010F.1_g007010 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 8.0e-07 58.9 206 32.5
QL11p023836 Quercus lobata HOM05D001755 ORTHO05D001665 8.0e-07 58.9 213 31.5
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 8.0e-07 58.9 191 30.9
Lj4C91T0 Lonicera japonica HOM05D001755 ORTHO05D001665 1.1e-06 58.5 217 32.3
Lj4P733T2 Lonicera japonica HOM05D001755 ORTHO05D001665 1.1e-06 58.5 200 33.5
Oeu011139.1 Olea europaea HOM05D001118 ORTHO05D000266 1.1e-06 58.5 84 36.9
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.4e-06 58.2 177 33.3
Eucgr.F02127 Eucalyptus grandis HOM05D001755 ORTHO05D001665 1.4e-06 58.2 227 31.3
Mapoly0073s0051 Marchantia polymorpha HOM05D000850 ORTHO05D000266 1.8e-06 57.8 47 55.3
ECA247G1217 Erigeron canadensis HOM05D001755 ORTHO05D001665 2.3e-06 57.4 202 29.2
Lj5A218T90 Lonicera japonica HOM05D001118 ORTHO05D000266 2.3e-06 57.4 70 41.4
LjContig00408g0015397 Lotus japonicus HOM05D001755 ORTHO05D001665 2.3e-06 57.4 265 29.8
PSO170G1368 Papaver somniferum HOM05D001118 ORTHO05D000266 2.3e-06 57.4 70 41.4
Sopen12g029930 Solanum pennellii HOM05D001755 ORTHO05D001665 2.3e-06 57.4 202 31.7
Lalb_Chr09g0323211 Lupinus albus HOM05D000850 ORTHO05D000266 3.1e-06 57.0 50 56.0
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.0e-06 56.6 250 29.2
PSO017G2458 Papaver somniferum HOM05D001118 ORTHO05D000266 4.0e-06 56.6 109 33.0
PGR102G1173 Punica granatum HOM05D000850 ORTHO05D000266 4.0e-06 56.6 52 51.9
HPP92_019274 Vanilla planifolia HOM05D000850 ORTHO05D000266 4.0e-06 56.6 51 51.0
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 5.2e-06 56.2 207 29.5
PSO541G0260 Papaver somniferum HOM05D001118 ORTHO05D000266 5.2e-06 56.2 83 38.6
PSO675G0821 Papaver somniferum HOM05D001118 ORTHO05D000266 5.2e-06 56.2 83 38.6
Psat2g065880 Pisum sativum HOM05D001755 ORTHO05D001665 5.2e-06 56.2 206 32.0
AL3G46540 Arabidopsis lyrata HOM05D001118 ORTHO05D000266 6.8e-06 55.8 100 33.0
MSTRG.10269 Avicennia marina HOM05D001755 ORTHO05D001665 6.8e-06 55.8 226 30.5
Eucgr.F00216 Eucalyptus grandis HOM05D000850 ORTHO05D000266 6.8e-06 55.8 52 51.9
Gohir.A03G183000 Gossypium hirsutum HOM05D001118 ORTHO05D000266 6.8e-06 55.8 95 36.8
Nn5g29941 Nelumbo nucifera HOM05D001755 ORTHO05D001665 6.8e-06 55.8 238 29.8
Solyc04g077960.1 Solanum lycopersicum HOM05D001118 ORTHO05D000266 6.8e-06 55.8 71 40.8
Sopen04g031550 Solanum pennellii HOM05D001118 ORTHO05D000266 6.8e-06 55.8 71 40.8
PGSC0003DMG400021526 Solanum tuberosum HOM05D001118 ORTHO05D000266 6.8e-06 55.8 71 40.8
THA.LOC104825774 Tarenaya hassleriana HOM05D001118 ORTHO05D000266 6.8e-06 55.8 91 36.3
TWI14G0408 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 6.8e-06 55.8 210 31.0
Atru.chr4.837 Acer truncatum HOM05D000850 ORTHO05D000266 8.9e-06 55.5 47 51.1
Atru.chr5.2366 Acer truncatum HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
CANSAT25G0110 Cannabis sativa HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Ciclev10030309m.g Citrus clementina HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Cc10_g05680 Coffea canephora HOM05D001118 ORTHO05D000266 8.9e-06 55.5 67 40.3
Dinv42233 Davidia involucrata HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Eucgr.I01069 Eucalyptus grandis HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Gohir.A06G023750 Gossypium hirsutum HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Gohir.D06G020850 Gossypium hirsutum HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Gorai.010G025400 Gossypium raimondii HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
MD08G1098800 Malus domestica HOM05D000850 ORTHO05D000266 8.9e-06 55.5 51 51.0
MD15G1081100 Malus domestica HOM05D000850 ORTHO05D000266 8.9e-06 55.5 51 51.0
Manes.05G181100 Manihot esculenta HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Oeu050882.1 Olea europaea HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Phvul.001G026800 Phaseolus vulgaris HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Potri.001G294300 Populus trichocarpa HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0
Rhsim07G0210000 Rhododendron simsii HOM05D001755 ORTHO05D001665 8.9e-06 55.5 188 34.6
SalBow3G2108 Salvia bowleyana HOM05D001118 ORTHO05D000266 8.9e-06 55.5 71 39.4
Sed0006645 Sechium edule HOM05D001755 ORTHO05D001665 8.9e-06 55.5 214 30.8
TAR628G0902 Trochodendron aralioides HOM05D001118 ORTHO05D000266 8.9e-06 55.5 70 40.0


User provided reference genes

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