Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 0.0e+00 1399.4 761 100.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 0.0e+00 1162.1 770 82.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 7.3e-232 807.7 716 60.6
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 9.6e-232 807.4 714 60.2
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 3.6e-231 805.4 728 60.0
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 3.6e-231 805.4 714 59.8
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 1.1e-230 803.9 733 60.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 3.1e-230 802.4 728 59.6
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.5e-229 800.0 725 59.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 2.2e-228 796.2 756 58.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.9e-228 795.8 725 58.5
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 4.9e-228 795.0 716 59.5
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.4e-227 793.5 722 59.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-227 792.7 735 58.9
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.2e-227 792.3 700 60.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.2e-227 792.3 736 59.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 9.3e-227 790.8 735 58.6
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 9.3e-227 790.8 721 59.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.2e-226 790.4 718 59.1
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 4.6e-226 788.5 712 59.1
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.3e-225 786.9 737 58.6
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.9e-225 785.4 727 58.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 5.1e-225 785.0 725 60.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 6.7e-225 784.6 770 56.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.5e-224 783.5 715 59.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.9e-224 783.1 728 58.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.5e-224 782.7 716 58.2
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 3.3e-224 782.3 732 59.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.3e-224 782.3 715 57.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 3.3e-224 782.3 727 59.3
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 3.3e-224 782.3 731 58.1
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.3e-223 780.4 741 57.4
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.3e-223 780.4 729 58.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.8e-223 779.2 715 57.3
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.7e-223 778.9 712 59.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 3.7e-223 778.9 718 58.2
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 3.7e-223 778.9 725 57.7
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 4.8e-223 778.5 791 55.8
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.8e-223 778.5 723 58.5
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 6.2e-223 778.1 721 58.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.1e-222 777.3 710 59.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 2.4e-222 776.2 772 56.5
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 2.4e-222 776.2 755 56.7
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.1e-222 775.8 760 55.7
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 5.3e-222 775.0 767 57.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 5.3e-222 775.0 725 57.7
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 5.3e-222 775.0 724 59.7
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.9e-222 774.6 717 58.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 6.9e-222 774.6 725 57.5
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.5e-221 773.5 710 58.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.5e-221 773.5 710 58.7
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.0e-221 773.1 710 59.0
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.4e-221 772.3 717 58.4
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 9.9e-221 770.8 731 58.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.7e-220 770.0 715 57.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 1.7e-220 770.0 767 56.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 4.9e-220 768.5 714 58.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 6.4e-220 768.1 710 59.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 2.5e-219 766.1 711 59.4
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 4.2e-219 765.4 711 58.1
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 9.3e-219 764.2 719 57.4
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.3e-219 764.2 714 58.3
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 2.7e-218 762.7 710 58.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.7e-218 762.7 649 62.7
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.0e-217 760.8 702 59.3
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.3e-217 760.4 721 56.7
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.8e-217 760.0 775 55.5
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 5.1e-217 758.4 718 57.7
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.5e-216 756.9 706 57.9
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.9e-216 756.5 783 55.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.3e-216 755.4 706 57.9
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 5.6e-216 755.0 705 57.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 7.4e-216 754.6 716 57.3
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 9.6e-216 754.2 720 57.9
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.3e-215 753.8 705 57.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.1e-215 753.1 736 56.2
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.1e-215 753.1 771 54.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 6.2e-215 751.5 716 57.4
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 5.3e-214 748.4 786 54.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.5e-213 746.9 719 56.6
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.4e-213 745.7 691 58.5
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.0e-212 744.2 718 56.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.0e-212 744.2 718 56.3
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 1.0e-212 744.2 752 55.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.2e-210 737.3 718 56.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.1e-210 736.5 719 56.3
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.1e-210 736.5 721 56.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.7e-209 731.5 720 56.2
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 6.9e-206 721.5 828 51.1
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.2e-205 720.7 709 55.7
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 5.0e-204 715.3 727 54.6
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.6e-202 709.1 772 53.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.8e-201 706.8 790 51.4
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 3.3e-200 702.6 676 57.5
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.7e-194 682.9 668 57.0
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 2.3e-193 679.9 675 56.3
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.3e-193 679.9 728 54.1
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.4e-184 649.0 722 49.3
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.7e-183 646.0 702 52.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 7.5e-176 621.7 748 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 6.3e-175 618.6 709 48.9
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-174 616.7 531 59.1
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.1e-171 607.8 581 55.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.0e-169 601.3 549 54.6
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 9.5e-163 578.2 533 55.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 4.7e-162 575.9 585 52.6
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 7.3e-155 552.0 310 85.2
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.8e-149 531.9 416 63.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.7e-148 530.8 514 53.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.0e-140 503.4 560 52.5
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.6e-131 472.6 416 55.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.2e-127 460.7 267 81.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 6.2e-122 442.6 344 66.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 6.7e-76 289.7 497 38.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 4.1e-73 280.4 629 36.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 5.3e-65 253.4 714 31.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.0e-63 246.9 270 50.7
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 4.4e-59 233.8 675 29.0
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.0e-55 222.6 169 66.9
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.7e-55 221.9 261 46.4
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 2.0e-40 171.8 99 79.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.0e-35 155.2 83 83.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.6e-32 144.1 276 38.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.4e-19 101.3 54 81.5
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 4.6e-16 90.9 105 48.6
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-13 82.4 79 53.2
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.7e-10 72.4 41 82.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.4e-09 69.3 126 35.7
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 3.3e-06 58.2 163 30.1


User provided reference genes

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