Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 9.8e-205 717.2 571 100.0
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.6e-170 603.6 570 89.5
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.5e-147 526.6 568 81.0
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.3e-145 520.0 571 80.0
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.1e-144 517.7 571 80.2
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.5e-144 517.3 569 79.1
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.8e-142 510.4 571 80.0
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 2.6e-141 506.5 569 79.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 2.9e-140 503.1 569 79.3
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 6.5e-140 501.9 572 79.4
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.9e-139 500.4 573 78.5
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 2.5e-139 500.0 573 78.7
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 5.5e-139 498.8 571 78.5
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 5.5e-139 498.8 570 78.9
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 9.3e-139 498.0 571 77.2
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.2e-138 497.7 573 78.0
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 1.6e-138 497.3 569 78.0
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.6e-138 497.3 358 71.5
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 2.1e-138 496.9 569 78.2
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 2.1e-138 496.9 569 78.9
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 2.7e-138 496.5 578 73.0
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.7e-138 496.5 359 71.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 3.5e-138 496.1 571 78.8
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 6.1e-138 495.4 571 76.9
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 7.9e-138 495.0 572 79.0
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 7.9e-138 495.0 564 79.4
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.0e-137 494.6 572 77.3
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.3e-137 494.2 571 78.3
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 3.0e-137 493.0 571 78.1
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.9e-137 492.7 572 78.3
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.1e-137 492.3 585 76.8
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 6.7e-137 491.9 586 76.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.1e-136 491.1 571 78.3
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.5e-136 490.7 571 78.1
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.9e-136 490.3 359 70.2
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.6e-135 487.3 359 68.5
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.6e-135 487.3 569 78.0
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.8e-135 486.5 359 69.6
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 2.8e-135 486.5 359 68.5
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 3.7e-135 486.1 359 69.9
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 3.7e-135 486.1 358 70.1
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 6.3e-135 485.3 571 77.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 2.4e-134 483.4 359 69.1
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 6.9e-134 481.9 569 76.8
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 1.5e-133 480.7 359 68.8
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.0e-133 480.3 580 77.1
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 2.0e-133 480.3 359 69.1
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 4.5e-133 479.2 571 76.2
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.0e-132 478.0 358 68.7
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.8e-132 476.1 359 68.5
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 8.5e-132 474.9 572 75.7
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.1e-131 474.6 359 67.7
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.4e-131 474.2 359 68.0
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 2.5e-131 473.4 572 76.4
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 7.2e-131 471.9 569 75.7
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.2e-130 471.1 574 76.3
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.6e-130 470.7 362 67.4
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 1.6e-130 470.7 358 66.8
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 2.1e-130 470.3 358 67.0
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.1e-130 468.8 361 68.4
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 1.8e-129 467.2 567 75.8
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 2.0e-128 463.8 569 75.0
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 2.0e-128 463.8 572 75.5
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.7e-127 460.7 358 66.2
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.1e-126 458.0 572 74.8
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 3.1e-126 456.4 359 66.3
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 6.9e-126 455.3 359 67.4
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.6e-125 453.4 568 62.5
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 3.4e-125 453.0 359 65.5
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.4e-125 453.0 359 67.4
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.9e-125 452.2 575 73.9
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.3e-124 451.1 359 66.9
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 2.1e-122 443.7 574 73.9
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.4e-121 441.0 368 62.8
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 8.8e-121 438.3 574 74.0
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 1.5e-120 437.6 359 63.0
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.5e-120 437.6 359 62.7
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.0e-120 437.2 574 73.9
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.0e-120 437.2 574 73.7
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.3e-120 436.4 358 64.8
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 1.3e-119 434.5 609 70.4
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.7e-119 434.1 357 63.0
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.7e-119 434.1 358 62.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 3.7e-119 433.0 355 63.7
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 3.7e-119 433.0 355 63.7
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.0e-117 427.2 572 68.5
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.5e-117 426.4 356 65.4
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 5.9e-117 425.6 360 62.8
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 1.1e-115 421.4 477 50.9
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.5e-115 421.0 359 64.1
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.0e-113 414.8 359 61.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.4e-113 414.5 354 62.7
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 4.0e-113 412.9 360 61.1
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 2.6e-112 410.2 574 72.3
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 9.7e-112 408.3 359 59.9
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.8e-111 406.8 574 72.3
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.4e-110 403.7 351 61.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 3.5e-109 399.8 575 71.3
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.7e-108 397.5 575 71.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 9.4e-107 391.7 572 66.3
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.4e-105 387.9 359 61.6
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.4e-104 382.9 604 62.9
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 2.4e-102 377.1 285 67.4
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 2.2e-100 370.5 341 60.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 8.5e-100 368.6 351 56.1
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 8.5e-100 368.6 279 68.1
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 5.5e-99 365.9 344 57.6
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.8e-94 350.9 579 66.8
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 3.8e-92 343.2 194 92.3
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.6e-92 342.4 277 68.6
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 3.4e-88 330.1 362 50.8
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.8e-86 324.3 358 50.3
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.3e-83 313.2 341 53.1
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 7.0e-78 295.8 603 61.4
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-71 275.0 512 66.4
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 1.0e-68 265.4 212 66.5
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.1e-54 218.8 183 66.7
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.1e-51 208.8 141 73.0
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.5e-48 196.8 185 61.1
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 1.7e-47 194.9 195 57.4
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 4.6e-45 186.8 576 44.8
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 7.9e-45 186.0 141 65.2
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.3e-44 185.3 279 45.2
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 3.1e-41 174.1 370 33.5
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 9.3e-38 162.5 130 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 2.7e-37 161.0 147 53.7
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 4.6e-37 160.2 293 39.9
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 1.5e-35 155.2 371 31.5
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 1.1e-33 149.1 291 36.8
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 5.3e-33 146.7 116 65.5
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.3e-31 142.1 428 29.0
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.5e-31 139.8 143 55.9
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 1.2e-24 119.0 293 85.7
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 4.2e-22 110.5 92 52.2
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.7e-19 100.1 66 68.2
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 7.4e-19 99.8 281 33.8
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.8e-18 97.1 87 51.7
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.4e-17 94.7 67 70.1
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 7.7e-16 89.7 77 53.2
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 9.4e-14 82.8 53 88.7
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 2.7e-13 81.3 161 40.4
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 9.7e-11 72.8 178 29.2
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 3.7e-10 70.9 346 25.1
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 9.1e-09 66.2 46 73.9
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.2e-08 65.9 52 65.4
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 3.4e-08 64.3 376 23.7
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.4e-08 64.3 54 66.7
Zm00001eb133410 Zea mays HOM05D002305 ORTHO05D002528 4.5e-08 63.9 38 92.1
Zm00001eb420260 Zea mays HOM05D002305 ORTHO05D000385 6.5e-07 60.1 39 84.6


User provided reference genes

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