Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb386430 Zea mays HOM05D000710 ORTHO05D000336 4.0e-125 451.4 227 100.0
Zm00001eb386420 Zea mays HOM05D000710 ORTHO05D000336 4.1e-45 185.7 106 86.8
Zm00001eb386440 Zea mays HOM05D000710 ORTHO05D000336 6.5e-43 178.3 246 47.2
Os02g0317500 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.1e-13 81.3 101 40.6
Zm00001eb354560 Zea mays HOM05D000710 ORTHO05D000336 1.4e-13 80.9 112 42.0
Os02g0317300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.1e-13 79.3 99 42.4
Os08g0193900 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.1e-13 79.3 97 46.4
Os08g0193300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 5.4e-13 79.0 109 42.2
Os08g0193200 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 9.2e-13 78.2 107 43.0
Zm00001eb413520 Zea mays HOM05D000710 ORTHO05D000336 9.2e-13 78.2 110 41.8
ECA240G4754 Erigeron canadensis HOM05D000710 ORTHO05D000336 3.5e-12 76.3 154 30.5
Os08g0193600 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 3.5e-12 76.3 82 48.8
Os08g0194000 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.6e-12 75.9 110 40.9
Os08g0193500 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.3e-11 74.3 107 42.1
Os08g0195800 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 5.0e-11 72.4 101 44.6
Zm00001eb417460 Zea mays HOM05D000710 ORTHO05D000336 6.6e-11 72.0 97 42.3
Eucgr.E02467 Eucalyptus grandis HOM05D000710 ORTHO05D000336 8.6e-11 71.6 162 34.0
Os08g0195900 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 2.5e-10 70.1 107 41.1
Os08g0196200 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 2.5e-10 70.1 111 40.5
AL9U10540 Arabidopsis lyrata HOM05D000710 ORTHO05D000336 4.3e-10 69.3 105 35.2
Lsat_1_v5_gn_1_7600 Lactuca sativa HOM05D000710 ORTHO05D000336 5.6e-10 68.9 148 29.1
PSO675G4530 Papaver somniferum HOM05D000710 ORTHO05D000336 9.5e-10 68.2 133 36.8
Lj2A324T64 Lonicera japonica HOM05D000710 ORTHO05D000336 1.6e-09 67.4 112 35.7
PSO541G4648 Papaver somniferum HOM05D000710 ORTHO05D000336 2.1e-09 67.0 99 39.4
PSO541G4900 Papaver somniferum HOM05D000710 ORTHO05D000336 2.1e-09 67.0 112 38.4
Eucgr.E02470 Eucalyptus grandis HOM05D000710 ORTHO05D000336 2.8e-09 66.6 155 32.9
PSO675G3801 Papaver somniferum HOM05D000710 ORTHO05D000336 2.8e-09 66.6 145 33.8
PSO675G8022 Papaver somniferum HOM05D000710 ORTHO05D000336 2.8e-09 66.6 112 38.4
ECA240G2827 Erigeron canadensis HOM05D000710 ORTHO05D000336 4.7e-09 65.9 101 33.7
Os11g0637300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.7e-09 65.9 116 37.1
AT4G05490 Arabidopsis thaliana HOM05D000710 ORTHO05D000336 6.2e-09 65.5 107 35.5
Lalb_Chr12g0204161 Lupinus albus HOM05D000710 ORTHO05D000336 8.0e-09 65.1 98 37.8
PSO541G2322 Papaver somniferum HOM05D000710 ORTHO05D000336 8.0e-09 65.1 145 33.1
Zm00001eb413420 Zea mays HOM05D000710 ORTHO05D000336 8.0e-09 65.1 118 37.3
Aqoxy2G00948 Aquilegia oxysepala HOM05D000710 ORTHO05D000336 1.0e-08 64.7 105 36.2
GSVIVG01021579001 Vitis vinifera HOM05D000710 ORTHO05D000336 1.4e-08 64.3 105 35.2
arahy.Tifrunner.gnm1.ann1.T21N8D Arachis hypogaea HOM05D000710 ORTHO05D000336 1.8e-08 63.9 167 29.9
A09p02890 Brassica napus HOM05D000710 ORTHO05D000336 2.3e-08 63.5 162 28.4
CARHR252060 Cardamine hirsuta HOM05D000710 ORTHO05D000336 2.3e-08 63.5 100 34.0
Os08g0195000 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 2.3e-08 63.5 109 37.6
CARHR252100 Cardamine hirsuta HOM05D000710 ORTHO05D000336 3.1e-08 63.2 119 31.9
Nn5g30829 Nelumbo nucifera HOM05D000710 ORTHO05D000336 3.1e-08 63.2 87 41.4
Aa31LG9G8900 Aethionema arabicum HOM05D000710 ORTHO05D000336 4.0e-08 62.8 100 34.0
Eucgr.E02464 Eucalyptus grandis HOM05D000710 ORTHO05D000336 4.0e-08 62.8 165 32.1
BraA09t35900Z Brassica rapa HOM05D000710 ORTHO05D000336 5.2e-08 62.4 102 36.3
CDE02G0027 Ceratophyllum demersum HOM05D000710 ORTHO05D000336 5.2e-08 62.4 103 37.9
Lsat_1_v5_gn_1_7501 Lactuca sativa HOM05D000710 ORTHO05D000336 5.2e-08 62.4 138 29.0
Sc05g0005910 Simmondsia chinensis HOM05D000710 ORTHO05D000336 5.2e-08 62.4 109 32.1
BraA09t35934Z Brassica rapa HOM05D000710 ORTHO05D000336 6.8e-08 62.0 111 34.2
Migut.E00911 Erythranthe guttata HOM05D000710 ORTHO05D000336 6.8e-08 62.0 108 36.1
MBI02_g19810_MAGBIO Magnolia biondii HOM05D000710 ORTHO05D000336 6.8e-08 62.0 100 37.0
RcHm_v2.0_Chr5g0015131 Rosa chinensis HOM05D000710 ORTHO05D000336 6.8e-08 62.0 104 34.6
RcHm_v2.0_Chr6g0277551 Rosa chinensis HOM05D000710 ORTHO05D000336 6.8e-08 62.0 103 34.0
Sed0013641 Sechium edule HOM05D000710 ORTHO05D000336 6.8e-08 62.0 117 32.5
Sed0002859 Sechium edule HOM05D000710 ORTHO05D000336 8.9e-08 61.6 127 34.6
ECA240G3040 Erigeron canadensis HOM05D000710 ORTHO05D000336 1.2e-07 61.2 205 24.9
Lsat_1_v5_gn_1_7640 Lactuca sativa HOM05D000710 ORTHO05D000336 1.2e-07 61.2 148 31.8
Eucgr.E02466 Eucalyptus grandis HOM05D000710 ORTHO05D000336 1.5e-07 60.8 96 39.6
Eucgr.E02469 Eucalyptus grandis HOM05D000710 ORTHO05D000336 1.5e-07 60.8 96 39.6
FvH4_3g09530 Fragaria vesca HOM05D000710 ORTHO05D000336 1.5e-07 60.8 126 33.3
FAN11G2146 Fragaria x ananassa HOM05D000710 ORTHO05D000336 1.5e-07 60.8 126 33.3
MD05G1060300 Malus domestica HOM05D000710 ORTHO05D000336 1.5e-07 60.8 135 31.9
MD05G1277000 Malus domestica HOM05D000710 ORTHO05D000336 1.5e-07 60.8 135 31.9
Nn6g31932 Nelumbo nucifera HOM05D000710 ORTHO05D000336 1.5e-07 60.8 89 38.2
Glyma.13G220200 Glycine max HOM05D000710 ORTHO05D000336 2.0e-07 60.5 59 49.2
QL05p054186 Quercus lobata HOM05D000710 ORTHO05D000336 2.0e-07 60.5 102 36.3
Haze_05723 Corylus avellana HOM05D000710 ORTHO05D000336 2.6e-07 60.1 88 37.5
Haze_05728 Corylus avellana HOM05D000710 ORTHO05D000336 2.6e-07 60.1 88 37.5
FAN25G2971 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.6e-07 60.1 131 32.1
HanXRQChr02g0045461 Helianthus annuus HOM05D000710 ORTHO05D000336 2.6e-07 60.1 150 25.3
HanXRQChr06g0182901 Helianthus annuus HOM05D000710 ORTHO05D000336 2.6e-07 60.1 114 32.5
Hma1.2p1_0119F.1_g056780 Hydrangea macrophylla HOM05D000710 ORTHO05D000336 2.6e-07 60.1 100 34.0
Phvul.006G166900 Phaseolus vulgaris HOM05D000710 ORTHO05D000336 2.6e-07 60.1 78 43.6
A09p02930 Brassica napus HOM05D000710 ORTHO05D000336 3.4e-07 59.7 111 33.3
Cfa000866 Carpinus fangiana HOM05D000710 ORTHO05D000336 3.4e-07 59.7 89 38.2
COL.COLO4_34054 Corchorus olitorius HOM05D000710 ORTHO05D000336 3.4e-07 59.7 113 34.5
CsaV3_6G052170 Cucumis sativus L. HOM05D000710 ORTHO05D000336 3.4e-07 59.7 109 33.9
RcHm_v2.0_Chr5g0015151 Rosa chinensis HOM05D000710 ORTHO05D000336 3.4e-07 59.7 128 32.8
BcaB01g02735 Brassica carinata HOM05D000710 ORTHO05D000336 4.4e-07 59.3 102 32.4
Haze_05720 Corylus avellana HOM05D000710 ORTHO05D000336 4.4e-07 59.3 86 38.4
FvH4_3g09552 Fragaria vesca HOM05D000710 ORTHO05D000336 4.4e-07 59.3 102 34.3
Lsat_1_v5_gn_1_7620 Lactuca sativa HOM05D000710 ORTHO05D000336 4.4e-07 59.3 107 29.9
MD05G1276900 Malus domestica HOM05D000710 ORTHO05D000336 4.4e-07 59.3 104 31.7
Oeu031324.1 Olea europaea HOM05D000710 ORTHO05D000336 4.4e-07 59.3 107 38.3
RcHm_v2.0_Chr5g0015221 Rosa chinensis HOM05D000710 ORTHO05D000336 4.4e-07 59.3 98 31.6
Actinidia13464 Actinidia chinensis HOM05D000710 ORTHO05D000336 5.8e-07 58.9 119 36.1
BolC9t53232H Brassica oleracea HOM05D000710 ORTHO05D000336 5.8e-07 58.9 130 32.3
Cc09_g05800 Coffea canephora HOM05D000710 ORTHO05D000336 5.8e-07 58.9 101 36.6
COL.COLO4_17666 Corchorus olitorius HOM05D000710 ORTHO05D000336 5.8e-07 58.9 103 34.0
HanXRQChr02g0039861 Helianthus annuus HOM05D000710 ORTHO05D000336 5.8e-07 58.9 143 27.3
Prupe.4G087700 Prunus persica HOM05D000710 ORTHO05D000336 5.8e-07 58.9 122 33.6
Aqoxy4G00438 Aquilegia oxysepala HOM05D000710 ORTHO05D000336 7.5e-07 58.5 135 27.4
Ciclev10016034m.g Citrus clementina HOM05D000710 ORTHO05D000336 7.5e-07 58.5 112 32.1
CsaV3_6G052160 Cucumis sativus L. HOM05D000710 ORTHO05D000336 7.5e-07 58.5 102 30.4
ECA240G2032 Erigeron canadensis HOM05D000710 ORTHO05D000336 7.5e-07 58.5 114 29.8
MD05G1060200 Malus domestica HOM05D000710 ORTHO05D000336 7.5e-07 58.5 101 31.7
PGR031G3634 Punica granatum HOM05D000710 ORTHO05D000336 7.5e-07 58.5 170 29.4
SalBow8G2132 Salvia bowleyana HOM05D000710 ORTHO05D000336 7.5e-07 58.5 100 31.0
Aqoxy2G01433 Aquilegia oxysepala HOM05D000710 ORTHO05D000336 9.8e-07 58.2 105 33.3
C05p05550 Brassica napus HOM05D000710 ORTHO05D000336 9.8e-07 58.2 98 34.7
Haze_05736 Corylus avellana HOM05D000710 ORTHO05D000336 9.8e-07 58.2 88 36.4
Manes.14G135100 Manihot esculenta HOM05D000710 ORTHO05D000336 9.8e-07 58.2 127 33.1
PSO541G6424 Papaver somniferum HOM05D000710 ORTHO05D000336 9.8e-07 58.2 136 31.6
Peaxi162Scf00045g02259 Petunia axillaris HOM05D000710 ORTHO05D000336 9.8e-07 58.2 102 36.3
RcHm_v2.0_Chr6g0310971 Rosa chinensis HOM05D000710 ORTHO05D000336 9.8e-07 58.2 89 34.8
BcaC05g24689 Brassica carinata HOM05D000710 ORTHO05D000336 1.3e-06 57.8 99 34.3
Carub.0002s1205 Capsella rubella HOM05D000710 ORTHO05D000336 1.3e-06 57.8 107 33.6
ECA240G2191 Erigeron canadensis HOM05D000710 ORTHO05D000336 1.3e-06 57.8 140 30.0
HanXRQChr14g0440701 Helianthus annuus HOM05D000710 ORTHO05D000336 1.3e-06 57.8 112 33.0
Nitab4.5_0002481g0050 Nicotiana tabacum HOM05D000710 ORTHO05D000336 1.3e-06 57.8 109 33.9
BcaB01g01916 Brassica carinata HOM05D000710 ORTHO05D000336 1.7e-06 57.4 175 28.6
CiPaw.10G087100 Carya illinoinensis HOM05D000710 ORTHO05D000336 1.7e-06 57.4 107 33.6
Thhalv10028845m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 1.7e-06 57.4 153 26.8
Lj2A324T63 Lonicera japonica HOM05D000710 ORTHO05D000336 1.7e-06 57.4 109 36.7
Prupe.4G087900 Prunus persica HOM05D000710 ORTHO05D000336 1.7e-06 57.4 116 32.8
Cfa000869 Carpinus fangiana HOM05D000710 ORTHO05D000336 2.2e-06 57.0 76 38.2
CiPaw.09G117600 Carya illinoinensis HOM05D000710 ORTHO05D000336 2.2e-06 57.0 115 32.2
HanXRQChr14g0457801 Helianthus annuus HOM05D000710 ORTHO05D000336 2.2e-06 57.0 112 33.0
Peaxi162Scf00394g00716 Petunia axillaris HOM05D000710 ORTHO05D000336 2.2e-06 57.0 113 31.0
Thecc.02G010600 Theobroma cacao HOM05D000710 ORTHO05D000336 2.2e-06 57.0 109 34.9
CsaV3_6G052140 Cucumis sativus L. HOM05D000710 ORTHO05D000336 2.9e-06 56.6 109 32.1
HanXRQChr02g0045881 Helianthus annuus HOM05D000710 ORTHO05D000336 2.9e-06 56.6 111 27.9
PGR031G0889 Punica granatum HOM05D000710 ORTHO05D000336 2.9e-06 56.6 99 37.4
Actinidia39596 Actinidia chinensis HOM05D000710 ORTHO05D000336 3.7e-06 56.2 118 33.1
MELO3C007094.2 Cucumis melo HOM05D000710 ORTHO05D000336 3.7e-06 56.2 82 37.8
ECA233G2283 Erigeron canadensis HOM05D000710 ORTHO05D000336 3.7e-06 56.2 100 29.0
FAN16G2227 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.7e-06 56.2 125 32.0
Glyma.15G092200 Glycine max HOM05D000710 ORTHO05D000336 3.7e-06 56.2 52 50.0
Nitab4.5_0000869g0120 Nicotiana tabacum HOM05D000710 ORTHO05D000336 3.7e-06 56.2 163 26.4
PSO017G5374 Papaver somniferum HOM05D000710 ORTHO05D000336 3.7e-06 56.2 114 34.2
C02p11080 Brassica napus HOM05D000710 ORTHO05D000336 4.9e-06 55.8 115 31.3
CiPaw.10G087800 Carya illinoinensis HOM05D000710 ORTHO05D000336 4.9e-06 55.8 120 29.2
Migut.H01342 Erythranthe guttata HOM05D000710 ORTHO05D000336 4.9e-06 55.8 98 34.7
FAN21G2256 Fragaria x ananassa HOM05D000710 ORTHO05D000336 4.9e-06 55.8 126 32.5
HanXRQChr14g0457201 Helianthus annuus HOM05D000710 ORTHO05D000336 4.9e-06 55.8 115 33.0
Os08g0194350 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.9e-06 55.8 113 36.3
RcHm_v2.0_Chr5g0015321 Rosa chinensis HOM05D000710 ORTHO05D000336 4.9e-06 55.8 76 40.8
Thecc.02G010500 Theobroma cacao HOM05D000710 ORTHO05D000336 4.9e-06 55.8 108 32.4
arahy.Tifrunner.gnm1.ann1.CU2LLM Arachis hypogaea HOM05D000710 ORTHO05D000336 6.4e-06 55.5 163 27.0
BcaC04g23955 Brassica carinata HOM05D000710 ORTHO05D000336 6.4e-06 55.5 80 36.2
CANSAT11G2519 Cannabis sativa HOM05D000710 ORTHO05D000336 6.4e-06 55.5 78 37.2
Carub.0002s1203 Capsella rubella HOM05D000710 ORTHO05D000336 6.4e-06 55.5 102 32.4
ClCG01G025000 Citrullus lanatus HOM05D000710 ORTHO05D000336 6.4e-06 55.5 79 36.7
Haze_05726 Corylus avellana HOM05D000710 ORTHO05D000336 6.4e-06 55.5 86 37.2
Thhalv10010638m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 6.4e-06 55.5 119 30.3
Nitab4.5_0009221g0020 Nicotiana tabacum HOM05D000710 ORTHO05D000336 6.4e-06 55.5 94 36.2
PSO017G4394 Papaver somniferum HOM05D000710 ORTHO05D000336 6.4e-06 55.5 97 36.1
PGSC0003DMG400005868 Solanum tuberosum HOM05D000710 ORTHO05D000336 6.4e-06 55.5 117 30.8
AL6G49050 Arabidopsis lyrata HOM05D000710 ORTHO05D000336 8.3e-06 55.1 105 33.3
AT4G05460 Arabidopsis thaliana HOM05D000710 ORTHO05D000336 8.3e-06 55.1 105 32.4
BcaC04g23950 Brassica carinata HOM05D000710 ORTHO05D000336 8.3e-06 55.1 102 31.4
BcaC04g23957 Brassica carinata HOM05D000710 ORTHO05D000336 8.3e-06 55.1 114 32.5
BolC9t53224H Brassica oleracea HOM05D000710 ORTHO05D000336 8.3e-06 55.1 114 32.5
DCAR_015302 Daucus carota HOM05D000710 ORTHO05D000336 8.3e-06 55.1 107 30.8
FvH4_2g31840 Fragaria vesca HOM05D000710 ORTHO05D000336 8.3e-06 55.1 89 33.7
FvH4_3g09640 Fragaria vesca HOM05D000710 ORTHO05D000336 8.3e-06 55.1 97 33.0
FAN24G0589 Fragaria x ananassa HOM05D000710 ORTHO05D000336 8.3e-06 55.1 89 33.7
SalBow7G2830 Salvia bowleyana HOM05D000710 ORTHO05D000336 8.3e-06 55.1 116 34.5


User provided reference genes

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