Gene: AT4G05460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G05460
  • Transcript Identifier AT4G05460.1
  • Gene Type Coding gene
  • Location Chr4 : 2761106-2762400 : negative

Gene Family Information

  • ID HOM05D000710
  • #Genes/#Species 809/85
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G05460.1
  • uniprot Q9M0U9

Descriptions

  • Description RNI-like superfamily protein
  • Computational description RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05497.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005737
IDA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001810 F-box domain
IPR032675 Leucine-rich repeat domain superfamily
IPR006553 Leucine-rich repeat, cysteine-containing subtype
IPR001611 Leucine-rich repeat
Mapman id Description
35.1 not assigned.annotated