Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 6.6e-145 517.3 253 100.0
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.9e-84 315.8 264 64.8
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 2.0e-61 240.0 231 51.1
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 3.5e-61 239.2 234 52.1
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.0e-60 237.7 232 52.6
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.0e-60 237.7 231 51.1
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.0e-60 237.7 168 76.2
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.2e-60 236.5 236 53.4
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 2.2e-60 236.5 232 52.6
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 2.2e-60 236.5 235 53.6
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.5e-59 233.8 218 53.7
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 2.5e-59 233.0 236 53.0
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 2.5e-59 233.0 238 49.2
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.2e-59 232.6 220 54.1
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 3.2e-59 232.6 231 48.5
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.5e-59 231.9 238 50.8
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 5.5e-59 231.9 232 50.9
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 5.5e-59 231.9 218 53.2
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 9.4e-59 231.1 235 49.8
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 9.4e-59 231.1 234 51.7
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.6e-58 230.3 238 52.1
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.1e-58 229.9 220 53.2
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 2.1e-58 229.9 221 52.0
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 2.1e-58 229.9 232 50.4
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 8.0e-58 228.0 235 50.2
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 8.0e-58 228.0 221 52.9
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.0e-57 227.6 222 48.6
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.8e-57 226.9 239 49.8
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.8e-57 226.9 216 51.9
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 3.0e-57 226.1 231 49.8
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 4.0e-57 225.7 215 50.7
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 4.0e-57 225.7 234 50.4
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 8.8e-57 224.6 248 47.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 8.8e-57 224.6 218 50.5
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.5e-56 223.8 239 49.8
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 3.4e-56 222.6 219 49.3
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 5.7e-56 221.9 218 50.0
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 5.7e-56 221.9 239 47.7
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.3e-55 220.7 215 47.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.7e-55 220.3 236 47.9
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.7e-55 220.3 228 46.9
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.7e-55 220.3 234 47.4
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.7e-55 220.3 232 47.4
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 2.2e-55 219.9 223 50.7
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.8e-55 219.5 215 50.7
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 4.8e-55 218.8 231 46.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 8.3e-55 218.0 226 49.6
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 8.3e-55 218.0 215 47.9
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-54 217.6 221 51.6
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 4.1e-54 215.7 215 47.4
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 4.1e-54 215.7 216 50.5
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 5.4e-54 215.3 226 49.6
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 7.0e-54 214.9 214 50.5
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 5.9e-53 211.8 249 48.2
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.3e-52 210.7 215 47.9
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.7e-52 210.3 214 49.5
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 2.9e-52 209.5 233 46.8
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.9e-52 209.5 233 45.9
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 8.6e-52 208.0 234 46.6
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.5e-51 207.2 227 47.1
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 4.2e-51 205.7 215 46.5
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 7.2e-51 204.9 218 48.2
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 9.5e-51 204.5 223 47.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 4.7e-50 202.2 231 45.5
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.7e-50 202.2 245 45.3
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 6.1e-50 201.8 223 47.1
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.8e-49 200.3 226 47.8
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.8e-49 200.3 228 46.1
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.3e-49 199.9 221 47.1
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 4.0e-49 199.1 235 46.0
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 8.9e-49 198.0 220 46.8
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 2.0e-48 196.8 233 45.1
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 3.4e-48 196.1 220 46.4
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.3e-47 194.1 236 45.8
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.7e-47 193.7 217 45.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 2.2e-47 193.4 234 46.2
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 2.8e-47 193.0 237 44.3
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 4.9e-47 192.2 240 44.2
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 8.3e-47 191.4 251 44.2
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 8.3e-47 191.4 235 44.3
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 8.3e-47 191.4 217 46.1
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.1e-46 191.0 216 46.3
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 4.1e-46 189.1 240 44.6
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.4e-46 188.7 218 47.2
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 7.0e-46 188.3 238 45.4
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 7.0e-46 188.3 238 45.4
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 9.2e-46 188.0 221 48.0
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 2.0e-45 186.8 240 43.8
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 2.0e-45 186.8 240 43.8
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.7e-45 186.4 236 43.2
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.7e-45 186.4 221 44.3
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 6.6e-44 181.8 243 42.4
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 7.3e-43 178.3 207 42.5
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 1.6e-42 177.2 213 43.7
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.1e-42 176.8 215 44.2
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.4e-41 174.1 215 43.3
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 1.8e-41 173.7 215 43.3
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.8e-41 173.7 215 42.8
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.0e-41 172.6 218 40.8
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 6.8e-41 171.8 221 39.8
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 8.9e-41 171.4 205 42.9
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.5e-40 170.6 214 41.6
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.4e-40 169.1 232 40.5
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-36 157.5 213 43.2
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.3e-35 152.9 216 41.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 3.3e-35 152.9 132 55.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.6e-35 152.1 213 41.8
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 7.3e-35 151.8 217 38.7
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 2.8e-34 149.8 98 66.3
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 3.6e-34 149.4 106 67.9
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 6.8e-33 145.2 220 40.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.8e-32 142.1 219 41.1
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 3.7e-31 139.4 115 56.5
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-30 137.9 198 41.9
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 2.4e-30 136.7 115 55.7
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.2e-29 134.4 225 37.8
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 6.0e-29 132.1 224 37.5
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 6.6e-28 128.6 237 35.9
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.5e-27 127.5 233 36.1
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 1.2e-26 124.4 232 33.6
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.2e-21 107.8 195 35.4
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-20 103.2 219 34.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.0e-20 103.2 219 35.2
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 6.0e-13 79.0 123 38.2
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 6.6e-12 75.5 220 30.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 2.5e-11 73.6 97 41.2
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 5.6e-11 72.4 51 56.9
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 2.1e-10 70.5 127 31.5
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 9.0e-09 65.1 116 33.6
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 3.4e-08 63.2 116 32.8
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.7e-07 60.8 52 48.1


User provided reference genes

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