Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb325530 Zea mays HOM05D001047 ORTHO05D000768 7.6e-57 223.8 128 100.0
Zm00001eb384630 Zea mays HOM05D001047 ORTHO05D000768 7.6e-57 223.8 128 100.0
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 2.7e-38 162.2 115 80.0
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 7.9e-38 160.6 115 79.1
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 1.0e-37 160.2 115 79.1
Zm00001eb220310 Zea mays HOM05D001047 ORTHO05D000768 1.1e-36 156.8 115 77.4
Os04g0653000 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 6.1e-30 134.4 107 72.9
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 7.2e-23 110.9 71 83.1
MBI13_g05964_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 4.5e-17 91.7 94 64.9
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 4.5e-17 91.7 94 64.9
Gohir.D07G018200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 6.8e-13 77.8 115 53.0
Gorai.001G018800 Gossypium raimondii HOM05D001047 ORTHO05D000768 6.8e-13 77.8 115 53.0
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 1.2e-12 77.0 86 57.0
Duzib150G1532 Durio zibethinus HOM05D001047 ORTHO05D000768 2.0e-12 76.3 86 57.0
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 2.0e-12 76.3 61 67.2
Gohir.A07G018400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.4e-12 75.1 101 55.4
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 5.7e-12 74.7 102 52.9
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 5.7e-12 74.7 98 51.0
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 7.5e-12 74.3 68 63.2
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 7.5e-12 74.3 102 52.9
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 7.5e-12 74.3 66 65.2
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 9.8e-12 73.9 113 46.9
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 9.8e-12 73.9 116 47.4
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 9.8e-12 73.9 98 55.1
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 2.8e-11 72.4 102 52.0
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 4.8e-11 71.6 88 55.7
Sp6g23620 Schrenkiella parvula HOM05D001047 ORTHO05D000768 3.1e-10 68.9 85 51.8
Aa31LG4G13350 Aethionema arabicum HOM05D001047 ORTHO05D000768 4.1e-10 68.6 75 57.3
BNapus_Darmor_BZH_scaffold_38p01280 Brassica napus HOM05D001047 ORTHO05D000768 4.1e-10 68.6 85 51.8
BolC2t07081H Brassica oleracea HOM05D001047 ORTHO05D000768 4.1e-10 68.6 85 51.8
BraA02t05602Z Brassica rapa HOM05D001047 ORTHO05D000768 4.1e-10 68.6 85 51.8
Gohir.D05G039000 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.1e-10 68.6 79 59.5
Gorai.009G039500 Gossypium raimondii HOM05D001047 ORTHO05D000768 4.1e-10 68.6 79 59.5
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 5.4e-10 68.2 86 53.5
C02p10500 Brassica napus HOM05D001047 ORTHO05D000768 5.4e-10 68.2 85 51.8
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 5.4e-10 68.2 86 53.5
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 7.0e-10 67.8 102 50.0
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 7.0e-10 67.8 102 50.0
FAN23G0009 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.0e-10 67.8 71 60.6
FAN23G0978 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.0e-10 67.8 71 60.6
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.0e-10 67.8 71 60.6
BcaB08g37320 Brassica carinata HOM05D001047 ORTHO05D000768 9.1e-10 67.4 86 52.3
BcaC03g13812 Brassica carinata HOM05D001047 ORTHO05D000768 9.1e-10 67.4 85 50.6
BcaB05g22803 Brassica carinata HOM05D001047 ORTHO05D000768 1.2e-09 67.0 65 58.5
RcHm_v2.0_Chr2g0096551 Rosa chinensis HOM05D001047 ORTHO05D000768 1.2e-09 67.0 71 60.6
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 1.6e-09 66.6 85 54.1
CARHR191950 Cardamine hirsuta HOM05D001047 ORTHO05D000768 1.6e-09 66.6 74 52.7
Gohir.A05G037500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.0e-09 66.2 112 48.2
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 2.0e-09 66.2 69 60.9
AL6G32450 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 3.5e-09 65.5 65 63.1
AT5G20900 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 3.5e-09 65.5 80 55.0
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 4.5e-09 65.1 111 49.5
Carub.0006s1919 Capsella rubella HOM05D001047 ORTHO05D000768 5.9e-09 64.7 71 57.7
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 5.9e-09 64.7 85 49.4
THA.LOC104815065 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 5.9e-09 64.7 66 54.5
TWI63G0579 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 5.9e-09 64.7 82 54.9
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 1.7e-08 63.2 69 58.0
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 1.7e-08 63.2 109 46.8
THA.LOC104799600 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 1.7e-08 63.2 61 57.4
Aa31LG1G13860 Aethionema arabicum HOM05D000048 ORTHO05D000436 2.9e-08 62.4 60 60.0
CANSAT56G0578 Cannabis sativa HOM05D001047 ORTHO05D000768 2.9e-08 62.4 62 59.7
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 3.8e-08 62.0 98 45.9
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 3.8e-08 62.0 98 45.9
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 5.0e-08 61.6 100 48.0
MD15G1225800 Malus domestica HOM05D001047 ORTHO05D000768 5.0e-08 61.6 110 50.0
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 6.5e-08 61.2 86 51.2
FAN19G2610 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.5e-08 61.2 86 51.2
FAN26G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.5e-08 61.2 86 51.2
FAN26G1307 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.5e-08 61.2 86 51.2
COL.COLO4_21176 Corchorus olitorius HOM05D001047 ORTHO05D000768 1.5e-07 60.1 35 80.0
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 2.5e-07 59.3 70 47.1
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 4.2e-07 58.5 63 54.0
Dinv07479 Davidia involucrata HOM05D001047 ORTHO05D000768 5.5e-07 58.2 39 64.1
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 7.2e-07 57.8 112 42.0
FvH4_5g11290 Fragaria vesca HOM05D001047 ORTHO05D000768 1.2e-06 57.0 35 71.4
FAN04G1998 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.2e-06 57.0 35 71.4
FAN13G0404 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.2e-06 57.0 35 71.4
FAN18G2883 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.2e-06 57.0 35 71.4
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 2.1e-06 56.2 97 45.4
Medtr2g044910 Medicago truncatula HOM05D001047 ORTHO05D000768 2.7e-06 55.8 77 53.2
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 6.1e-06 54.7 81 49.4


User provided reference genes

Program Settings