Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 0.0e+00 2328.5 1367 100.0
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 0.0e+00 1758.0 1373 80.3
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.4e-161 575.1 1494 36.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.5e-161 574.3 1487 36.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.7e-160 570.9 1516 35.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 3.5e-160 570.5 1515 36.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.6e-160 570.1 1487 36.2
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 3.9e-159 567.0 1547 36.3
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.3e-157 562.0 1484 37.5
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.8e-157 560.8 1512 36.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 4.8e-157 560.1 1495 36.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.1e-156 558.9 1506 38.9
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 5.3e-156 556.6 1449 37.1
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 9.0e-156 555.8 1526 37.4
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 5.0e-154 550.1 1549 35.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 6.5e-154 549.7 1488 35.7
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 3.2e-153 547.4 1515 36.8
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 5.5e-153 546.6 1506 35.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.6e-152 545.0 1491 36.8
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.7e-152 544.3 1318 37.9
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.6e-152 543.9 1477 34.9
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.6e-152 543.9 1534 35.6
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.4e-151 542.0 1603 35.7
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.8e-151 541.6 1526 36.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 1.8e-151 541.6 1506 35.3
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.5e-150 538.5 1485 36.7
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 4.3e-150 537.0 1508 36.7
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 5.7e-150 536.6 1486 36.8
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 7.4e-150 536.2 1446 35.9
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 3.7e-149 533.9 1500 35.7
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 6.3e-149 533.1 1520 36.6
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.4e-148 531.9 1530 35.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 2.4e-148 531.2 1516 35.1
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.6e-147 527.7 1538 33.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.8e-146 523.9 1412 37.7
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 8.5e-146 522.7 1484 35.5
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.1e-145 522.3 1462 39.3
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 5.5e-145 520.0 1501 35.8
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 9.4e-145 519.2 1508 37.5
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 3.6e-144 517.3 1584 35.4
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 7.9e-144 516.2 1216 38.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.0e-143 515.8 1464 35.3
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.8e-143 515.0 1396 38.7
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.8e-143 512.7 1484 38.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.1e-142 512.3 1488 37.5
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.5e-142 511.9 1489 35.1
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.4e-142 510.4 1518 36.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 4.4e-142 510.4 1486 35.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.7e-141 508.4 1541 35.3
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.8e-141 507.7 1545 35.6
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.1e-140 505.8 1402 37.6
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.4e-140 505.4 1487 33.8
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.1e-140 504.2 1508 36.4
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 5.3e-140 503.4 1521 35.0
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.0e-139 501.5 1483 37.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.5e-139 500.4 1492 34.9
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 3.8e-138 497.3 1527 35.0
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 3.8e-138 497.3 1499 37.4
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.4e-137 495.4 454 73.3
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 5.5e-137 493.4 1486 34.3
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 7.2e-137 493.0 1391 35.9
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.6e-136 491.9 1488 34.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.6e-136 490.7 1487 33.9
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 3.0e-135 487.6 1452 35.2
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 2.6e-134 484.6 1385 35.2
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 9.7e-134 482.6 1426 36.3
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.7e-133 481.9 1517 35.7
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.1e-132 479.2 1486 35.5
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.7e-130 471.9 1561 34.3
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.7e-128 464.5 1451 35.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.7e-128 463.8 1091 37.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.7e-128 463.8 1173 37.8
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.3e-127 461.5 1265 34.2
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 6.7e-127 459.9 1435 35.8
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.1e-124 452.6 1603 32.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.2e-123 449.1 1651 32.5
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.0e-122 446.0 1267 35.9
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.5e-121 441.4 1417 36.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.5e-121 441.4 1401 36.4
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.2e-121 441.0 1555 33.1
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-119 435.6 1427 35.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.4e-119 435.6 1354 35.9
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.0e-118 431.8 1463 34.1
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 5.7e-118 430.3 1423 36.0
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.3e-117 429.1 1428 35.9
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 3.7e-117 427.6 1427 32.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.4e-116 425.6 1443 34.6
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.8e-116 425.2 757 44.8
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-115 422.5 1452 33.8
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.6e-115 422.2 1406 35.5
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.6e-115 422.2 1406 35.5
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 5.9e-115 420.2 1431 35.2
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.9e-113 415.2 1214 37.9
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-108 399.1 1441 31.6
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.8e-108 398.7 1566 33.1
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 7.3e-105 386.7 953 35.2
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 4.7e-104 384.0 1436 33.3
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 8.3e-101 373.2 1465 32.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 1.4e-100 372.5 1495 35.2
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 1.2e-99 369.4 1400 32.9
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.0e-90 338.2 1297 33.8
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.1e-87 329.7 1039 31.2
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.0e-82 313.2 1178 28.1
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.9e-76 292.4 1443 30.9
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.4e-76 292.0 853 38.6
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.5e-73 282.0 603 35.7
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.4e-70 271.6 1487 25.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.5e-65 256.1 1479 27.4
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.3e-65 254.6 1308 27.6
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 6.2e-64 250.8 608 40.6
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.4e-63 249.6 1425 29.1
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.0e-62 245.7 939 27.1
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.1e-60 240.0 271 42.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 4.3e-57 228.0 954 28.1
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 4.5e-46 191.4 822 30.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 9.7e-33 147.1 458 32.8
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.7e-32 146.4 204 43.6
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 2.3e-26 125.9 450 29.8
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.2e-22 113.6 172 37.2
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 5.9e-22 111.3 233 40.8
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 7.2e-20 104.4 93 51.6
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.7e-19 102.4 233 35.6
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.4e-18 100.1 105 50.5
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.2e-18 98.2 76 59.2
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.4e-15 90.1 71 56.3
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 3.1e-15 89.0 311 25.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.6e-14 85.9 73 57.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 5.9e-14 84.7 64 59.4
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-13 83.2 748 23.7
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.7e-13 83.2 129 39.5
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 5.0e-13 81.6 69 52.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 7.2e-12 77.8 348 27.6
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.2e-11 77.0 724 23.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.6e-11 76.6 49 65.3
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 9.7e-09 67.4 65 46.2
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.6e-06 60.1 75 41.3
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.6e-06 60.1 50 54.0


User provided reference genes

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