Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382760 Zea mays HOM05D006649 ORTHO05D008754 4.3e-158 561.2 272 100.0
Zm00001eb339600 Zea mays HOM05D006649 ORTHO05D008754 1.5e-62 243.8 117 99.1
Os08g0557400 Oryza sativa ssp. japonica HOM05D006649 ORTHO05D008754 9.8e-62 241.1 126 88.9
PGR119G1752 Punica granatum HOM05D006649 ORTHO05D008754 4.9e-53 212.2 126 78.6
SalBow6G0396 Salvia bowleyana HOM05D006649 ORTHO05D008754 1.1e-52 211.1 126 77.8
CiPaw.13G139500 Carya illinoinensis HOM05D006649 ORTHO05D008754 3.2e-52 209.5 126 77.0
Nn6g35002 Nelumbo nucifera HOM05D006649 ORTHO05D008754 7.0e-52 208.4 126 76.2
SGA_v2.0_scaffold147G36353 Striga asiatica HOM05D006649 ORTHO05D008754 7.0e-52 208.4 126 76.2
Medtr4g055030 Medicago truncatula HOM05D006649 ORTHO05D008754 1.2e-51 207.6 130 73.8
Oeu035544.1 Olea europaea HOM05D006649 ORTHO05D008754 1.6e-51 207.2 126 76.2
QL01p013359 Quercus lobata HOM05D006649 ORTHO05D008754 2.7e-51 206.5 126 77.8
Cc01_g09580 Coffea canephora HOM05D006649 ORTHO05D008754 4.6e-51 205.7 126 76.2
Nn2g14062 Nelumbo nucifera HOM05D006649 ORTHO05D008754 4.6e-51 205.7 126 76.2
Manes.04G006800 Manihot esculenta HOM05D006649 ORTHO05D008754 6.0e-51 205.3 125 74.4
Lj3g0022718 Lotus japonicus HOM05D006649 ORTHO05D008754 1.0e-50 204.5 126 76.2
Manes.11G159300 Manihot esculenta HOM05D006649 ORTHO05D008754 1.3e-50 204.1 126 73.8
arahy.Tifrunner.gnm1.ann1.AS0IPM Arachis hypogaea HOM05D006649 ORTHO05D008754 1.7e-50 203.8 126 77.8
arahy.Tifrunner.gnm1.ann1.WDN5HE Arachis hypogaea HOM05D006649 ORTHO05D008754 1.7e-50 203.8 126 77.8
Glyma.12G086800 Glycine max HOM05D006649 ORTHO05D008754 1.7e-50 203.8 126 76.2
Potri.004G186400 Populus trichocarpa HOM05D006649 ORTHO05D008754 2.3e-50 203.4 126 74.6
Prupe.6G122700 Prunus persica HOM05D006649 ORTHO05D008754 2.3e-50 203.4 126 74.6
Sabra09G0115900 Salix brachista HOM05D006649 ORTHO05D008754 3.0e-50 203.0 126 73.0
TPR.G15571 Trifolium pratense HOM05D006649 ORTHO05D008754 3.0e-50 203.0 130 73.8
Cfa010067 Carpinus fangiana HOM05D006649 ORTHO05D008754 3.9e-50 202.6 126 75.4
Migut.N02505 Erythranthe guttata HOM05D006649 ORTHO05D008754 3.9e-50 202.6 130 72.3
GSVIVG01031373001 Vitis vinifera HOM05D006649 ORTHO05D008754 3.9e-50 202.6 126 75.4
PSO339G3959 Papaver somniferum HOM05D006649 ORTHO05D008754 5.0e-50 202.2 126 75.4
Potri.009G146800 Populus trichocarpa HOM05D006649 ORTHO05D008754 5.0e-50 202.2 126 73.0
TWI79G0266 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 5.0e-50 202.2 126 74.6
TWI79G0985 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 5.0e-50 202.2 126 74.6
Atru.chr3.3344 Acer truncatum HOM05D006649 ORTHO05D008754 8.6e-50 201.4 126 73.0
Haze_23431 Corylus avellana HOM05D006649 ORTHO05D008754 8.6e-50 201.4 126 74.6
MD11G1159700 Malus domestica HOM05D006649 ORTHO05D008754 8.6e-50 201.4 126 74.6
Thecc.09G288800 Theobroma cacao HOM05D006649 ORTHO05D008754 8.6e-50 201.4 126 73.8
vmacro03292 Vaccinium macrocarpon HOM05D006649 ORTHO05D008754 8.6e-50 201.4 126 74.6
COL.COLO4_19946 Corchorus olitorius HOM05D000146 ORTHO05D000178 1.1e-49 201.1 126 73.8
HPP92_013801 Vanilla planifolia HOM05D006649 ORTHO05D008754 1.1e-49 201.1 126 73.8
Phvul.011G091000 Phaseolus vulgaris HOM05D006649 ORTHO05D008754 1.5e-49 200.7 126 75.4
Actinidia24190 Actinidia chinensis HOM05D006649 ORTHO05D008754 1.9e-49 200.3 126 74.6
PSO384G2883 Papaver somniferum HOM05D006649 ORTHO05D008754 2.5e-49 199.9 126 74.6
Rhsim13G0107300 Rhododendron simsii HOM05D006649 ORTHO05D008754 2.5e-49 199.9 126 73.8
Psat7g189840 Pisum sativum HOM05D006649 ORTHO05D008754 3.3e-49 199.5 126 73.0
Lj2A991T88 Lonicera japonica HOM05D006649 ORTHO05D008754 4.3e-49 199.1 126 75.4
Hma1.2p1_0695F.1_g204540 Hydrangea macrophylla HOM05D006649 ORTHO05D008754 5.6e-49 198.7 130 70.8
RcHm_v2.0_Chr5g0043851 Rosa chinensis HOM05D006649 ORTHO05D008754 5.6e-49 198.7 126 73.0
AUR62039249 Chenopodium quinoa HOM05D006649 ORTHO05D008754 7.3e-49 198.4 126 72.2
CsaV3_6G014840 Cucumis sativus L. HOM05D006649 ORTHO05D008754 9.5e-49 198.0 126 74.6
FAN25G2701 Fragaria x ananassa HOM05D006649 ORTHO05D008754 1.2e-48 197.6 126 73.8
PGSC0003DMG400026546 Solanum tuberosum HOM05D006649 ORTHO05D008754 1.2e-48 197.6 130 72.3
Nitab4.5_0009861g0020 Nicotiana tabacum HOM05D006649 ORTHO05D008754 1.6e-48 197.2 126 73.8
Eucgr.J00458 Eucalyptus grandis HOM05D006649 ORTHO05D008754 2.1e-48 196.8 126 73.0
Hund20864 Selenicereus undatus HOM05D006649 ORTHO05D008754 2.1e-48 196.8 126 72.2
unitig_8.g3286 Utricularia gibba HOM05D006649 ORTHO05D008754 2.1e-48 196.8 130 70.0
VMungo1127G2203 Vigna mungo HOM05D006649 ORTHO05D008754 2.1e-48 196.8 126 73.8
HanXRQChr01g0019741 Helianthus annuus HOM05D006649 ORTHO05D008754 2.8e-48 196.4 126 73.0
Glyma.11G187700 Glycine max HOM05D006649 ORTHO05D008754 4.7e-48 195.7 126 73.8
Nitab4.5_0006735g0030 Nicotiana tabacum HOM05D006649 ORTHO05D008754 6.2e-48 195.3 124 74.2
Gohir.A05G082800 Gossypium hirsutum HOM05D006649 ORTHO05D008754 8.1e-48 194.9 126 71.4
Gohir.D05G085700 Gossypium hirsutum HOM05D006649 ORTHO05D008754 8.1e-48 194.9 126 71.4
Gorai.009G087400 Gossypium raimondii HOM05D000146 ORTHO05D000178 8.1e-48 194.9 126 71.4
Lsat_1_v5_gn_1_62060 Lactuca sativa HOM05D006649 ORTHO05D008754 1.1e-47 194.5 126 74.6
Solyc11g067060.3 Solanum lycopersicum HOM05D006649 ORTHO05D008754 1.1e-47 194.5 130 71.5
Sopen11g026770 Solanum pennellii HOM05D006649 ORTHO05D008754 1.1e-47 194.5 130 71.5
TAR633G2780 Trochodendron aralioides HOM05D006649 ORTHO05D008754 1.1e-47 194.5 126 69.8
Ca_19382_v3 Cicer arietinum L. HOM05D006649 ORTHO05D008754 1.8e-47 193.7 126 71.4
AUR62009801 Chenopodium quinoa HOM05D006649 ORTHO05D008754 2.3e-47 193.4 126 70.6
Sabra04G0125600 Salix brachista HOM05D006649 ORTHO05D008754 2.3e-47 193.4 126 72.2
ATR0820G177 Amborella trichopoda HOM05D006649 ORTHO05D008754 8.9e-47 191.4 126 69.0
CANSAT54G3044 Cannabis sativa HOM05D006649 ORTHO05D008754 8.9e-47 191.4 126 68.3
CAN.G644.11 Capsicum annuum HOM05D006649 ORTHO05D008754 1.2e-46 191.0 126 69.8
DCAR_006154 Daucus carota HOM05D006649 ORTHO05D008754 2.0e-46 190.3 126 69.8
Lalb_Chr19g0136681 Lupinus albus HOM05D006649 ORTHO05D008754 2.0e-46 190.3 126 69.8
THA.LOC104810902 Tarenaya hassleriana HOM05D006649 ORTHO05D008754 4.4e-46 189.1 126 69.0
EL10Ac7g15785 Beta vulgaris HOM05D006649 ORTHO05D008754 3.7e-45 186.0 126 67.5
A06p21790 Brassica napus HOM05D006649 ORTHO05D008754 3.7e-45 186.0 126 67.5
CSS0006150 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 3.7e-45 186.0 126 69.8
BcaC01g02065 Brassica carinata HOM05D006649 ORTHO05D008754 8.3e-45 184.9 126 67.5
C03p69000 Brassica napus HOM05D006649 ORTHO05D008754 8.3e-45 184.9 126 67.5
BolC3t19153H Brassica oleracea HOM05D006649 ORTHO05D008754 8.3e-45 184.9 126 67.5
BraA06t25266Z Brassica rapa HOM05D006649 ORTHO05D008754 1.4e-44 184.1 127 67.7
Carub.0015s0012 Capsella rubella HOM05D006649 ORTHO05D008754 1.4e-44 184.1 126 68.3
Carub.0005s1026 Capsella rubella HOM05D006649 ORTHO05D008754 1.9e-44 183.7 126 68.3
Carub.0015s0017 Capsella rubella HOM05D006649 ORTHO05D008754 1.9e-44 183.7 126 68.3
CBR_g29713 Chara braunii HOM05D006649 ORTHO05D008754 1.9e-44 183.7 127 66.9
AT3G44620 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 2.4e-44 183.3 126 68.3
Sc21g0004770 Simmondsia chinensis HOM05D006649 ORTHO05D008754 4.1e-44 182.6 126 65.1
BcaB01g01150 Brassica carinata HOM05D006649 ORTHO05D008754 5.4e-44 182.2 126 66.7
Duzib170G0763 Durio zibethinus HOM05D006649 ORTHO05D008754 5.4e-44 182.2 153 59.5
CARHR151530 Cardamine hirsuta HOM05D006649 ORTHO05D008754 4.6e-43 179.1 126 66.7
Pp3c2_15060 Physcomitrium patens HOM05D006649 ORTHO05D008754 4.6e-43 179.1 126 65.9
Sp5g16580 Schrenkiella parvula HOM05D006649 ORTHO05D008754 2.3e-42 176.8 126 66.7
TPR.G9708 Trifolium pratense HOM05D006649 ORTHO05D008754 8.6e-42 174.9 125 66.4
CDE08G1146 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 9.5e-41 171.4 110 70.0
Mapoly0056s0130 Marchantia polymorpha HOM05D006649 ORTHO05D008754 2.8e-40 169.9 126 61.1
MELO3C021441.2 Cucumis melo HOM05D006649 ORTHO05D008754 8.1e-40 168.3 124 67.7
SMO356G0095 Selaginella moellendorffii HOM05D006649 ORTHO05D008754 3.4e-38 162.9 136 58.1
Aa31LG4G14340 Aethionema arabicum HOM05D006649 ORTHO05D008754 4.4e-38 162.5 165 50.9
Actinidia07225 Actinidia chinensis HOM05D006649 ORTHO05D008754 3.8e-37 159.5 100 73.0
Ah.15g095620 Amaranthus hybridus HOM05D006649 ORTHO05D008754 3.5e-35 152.9 99 70.7
CSS0022960 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 2.5e-33 146.7 126 57.9
ClCG02G022010 Citrullus lanatus HOM05D006649 ORTHO05D008754 2.5e-33 146.7 110 68.2
Dinv29440 Davidia involucrata HOM05D006649 ORTHO05D008754 7.3e-33 145.2 92 71.7
FvH4_3g24360 Fragaria vesca HOM05D006649 ORTHO05D008754 6.2e-32 142.1 96 70.8
Thhalv10002731m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 8.1e-32 141.7 96 66.7
Zm00001eb039610 Zea mays HOM05D006649 ORTHO05D008754 1.4e-31 141.0 72 97.2
AL5G22830 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 1.5e-30 137.5 96 65.6
AL5G22760 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 2.0e-30 137.1 96 65.6
Peaxi162Scf01284g00017 Petunia axillaris HOM05D006649 ORTHO05D008754 8.4e-29 131.7 133 52.6
SEGI_31986 Sequoiadendron giganteum HOM05D006649 ORTHO05D008754 2.4e-28 130.2 98 65.3
Zm00001eb025680 Zea mays HOM05D061082 ORTHO05D443008 4.6e-27 125.9 83 77.1
Cre14.g632767 Chlamydomonas reinhardtii HOM05D006649 ORTHO05D008754 1.1e-23 114.8 143 44.1
Sed0010741 Sechium edule HOM05D006649 ORTHO05D008754 1.8e-23 114.0 71 76.1
Duzib168G0232 Durio zibethinus HOM05D006649 ORTHO05D008754 5.3e-23 112.5 71 74.6
PRCOL_00004711 Prasinoderma coloniale HOM05D006649 ORTHO05D008754 6.4e-21 105.5 143 37.8
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 8.4e-13 78.6 127 35.4
Zm00001eb025930 Zea mays HOM05D061082 ORTHO05D446419 3.5e-11 73.2 54 75.9


User provided reference genes

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