Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 4.7e-172 607.8 321 100.0
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 2.3e-150 535.8 321 91.3
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.9e-125 453.0 235 100.0
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 2.2e-73 280.0 153 95.4
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.9e-56 223.8 160 68.1
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 1.9e-56 223.8 153 69.3
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 1.9e-56 223.8 153 69.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 1.6e-55 220.7 147 72.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.0e-54 218.0 153 69.9
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 2.3e-54 216.9 153 69.3
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.3e-54 216.9 153 69.9
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 4.0e-54 216.1 152 70.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.0e-54 216.1 153 70.6
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 2.0e-53 213.8 153 69.3
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 5.8e-53 212.2 153 68.0
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 5.8e-53 212.2 153 68.6
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 7.5e-53 211.8 154 67.5
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 9.8e-53 211.5 147 71.4
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.8e-53 211.5 153 69.3
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 1.7e-52 210.7 153 67.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.2e-52 210.3 147 68.7
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 3.7e-52 209.5 153 69.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 3.7e-52 209.5 147 69.4
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 6.4e-52 208.8 154 66.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 6.4e-52 208.8 152 69.1
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.1e-51 208.0 147 68.7
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.1e-51 208.0 147 69.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 1.4e-51 207.6 153 67.3
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 1.4e-51 207.6 153 68.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 1.4e-51 207.6 153 68.0
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 1.9e-51 207.2 147 66.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.4e-51 206.8 153 67.3
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 3.2e-51 206.5 147 66.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 3.2e-51 206.5 148 66.9
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 3.2e-51 206.5 147 68.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 4.1e-51 206.1 147 68.7
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 4.1e-51 206.1 148 67.6
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 5.4e-51 205.7 147 68.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 5.4e-51 205.7 147 67.3
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 5.4e-51 205.7 153 66.7
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 7.0e-51 205.3 147 68.7
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 1.6e-50 204.1 147 67.3
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 2.0e-50 203.8 147 66.7
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 2.7e-50 203.4 153 67.3
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 2.7e-50 203.4 153 66.0
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 3.5e-50 203.0 147 67.3
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 4.6e-50 202.6 147 66.7
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 6.0e-50 202.2 147 67.3
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 7.8e-50 201.8 147 67.3
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.8e-50 201.8 147 67.3
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 1.0e-49 201.4 147 65.3
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 1.0e-49 201.4 147 65.3
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 64.6
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 1.3e-49 201.1 147 67.3
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 1.7e-49 200.7 147 66.0
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 1.7e-49 200.7 147 66.7
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.7e-49 200.7 153 64.1
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 1.7e-49 200.7 147 66.0
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 2.3e-49 200.3 147 66.0
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.3e-49 200.3 147 66.0
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 3.0e-49 199.9 147 67.3
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 3.0e-49 199.9 147 67.3
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 3.9e-49 199.5 146 65.1
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 5.0e-49 199.1 147 64.6
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 5.0e-49 199.1 147 65.3
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 6.6e-49 198.7 147 64.6
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 8.6e-49 198.4 147 64.6
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 8.6e-49 198.4 146 65.1
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 1.1e-48 198.0 147 63.9
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 1.1e-48 198.0 147 63.9
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 1.5e-48 197.6 174 59.8
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 1.9e-48 197.2 147 65.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 2.5e-48 196.8 146 65.1
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.3e-48 196.4 153 64.1
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 5.6e-48 195.7 153 64.1
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 2.1e-47 193.7 153 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 2.8e-47 193.4 153 60.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 2.8e-47 193.4 164 62.2
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 3.6e-47 193.0 153 59.5
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 1.4e-46 191.0 153 64.1
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 4.0e-46 189.5 153 60.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 8.9e-46 188.3 147 63.9
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.2e-45 188.0 147 63.9
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.2e-45 188.0 147 63.9
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 2.2e-44 183.7 152 65.1
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 3.7e-44 183.0 147 63.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 3.7e-44 183.0 147 63.3
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 1.1e-43 181.4 147 61.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.4e-43 181.0 153 60.1
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.3e-41 174.5 147 59.9
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.1e-40 171.4 153 51.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 1.9e-40 170.6 123 69.1
Zm00001eb346960 Zea mays HOM05D000062 ORTHO05D001642 1.7e-36 157.5 89 94.4
Zm00001eb346000 Zea mays HOM05D000062 ORTHO05D005477 2.2e-36 157.1 86 98.8
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.9e-28 130.2 108 63.9
Zm00001eb283800 Zea mays HOM05D000062 ORTHO05D001642 1.7e-25 120.9 92 77.2
Zm00001eb283640 Zea mays HOM05D000062 ORTHO05D001642 1.3e-23 114.8 92 70.7
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 2.6e-21 107.1 72 68.1
Zm00001eb346940 Zea mays HOM05D000062 ORTHO05D001642 1.3e-20 104.8 87 69.0
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.6e-15 87.8 64 68.8
Os05g0181000 Oryza sativa ssp. japonica HOM05D000062 ORTHO05D001642 9.0e-14 82.0 91 57.1
Os01g0180800 Oryza sativa ssp. japonica HOM05D000062 ORTHO05D001642 3.4e-13 80.1 100 51.0
FAN02G1639 Fragaria x ananassa HOM05D000062 ORTHO05D001642 6.7e-09 65.9 91 50.5
RcHm_v2.0_Chr2g0137851 Rosa chinensis HOM05D000062 ORTHO05D001642 6.7e-09 65.9 91 48.4
FvH4_6g31170 Fragaria vesca HOM05D000062 ORTHO05D001642 3.3e-08 63.5 91 48.4
TAR626G1353 Trochodendron aralioides HOM05D000062 ORTHO05D001642 3.3e-08 63.5 91 49.5
Cc04_g03440 Coffea canephora HOM05D000062 ORTHO05D001642 4.3e-08 63.2 91 47.3
TAR383G0620 Trochodendron aralioides HOM05D000062 ORTHO05D001642 4.3e-08 63.2 88 47.7
FAN14G5508 Fragaria x ananassa HOM05D000062 ORTHO05D001642 5.6e-08 62.8 91 48.4
SGA_v2.0_scaffold17G08168 Striga asiatica HOM05D000062 ORTHO05D001642 5.6e-08 62.8 89 44.9
CSS0014069 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D001642 7.4e-08 62.4 88 46.6
CSS0023577 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D001642 7.4e-08 62.4 88 46.6
HPP92_008693 Vanilla planifolia HOM05D000062 ORTHO05D001642 7.4e-08 62.4 87 40.2
CiPaw.01G239400 Carya illinoinensis HOM05D000062 ORTHO05D001642 9.6e-08 62.0 91 47.3
Aqoxy7G01743 Aquilegia oxysepala HOM05D000062 ORTHO05D001642 1.3e-07 61.6 90 46.7
CANSAT56G3544 Cannabis sativa HOM05D000062 ORTHO05D001642 1.3e-07 61.6 91 48.4
Gohir.A10G080000 Gossypium hirsutum HOM05D000062 ORTHO05D001642 1.6e-07 61.2 91 47.3
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 2.1e-07 60.8 91 46.2
Prupe.3G071300 Prunus persica HOM05D000062 ORTHO05D001642 2.1e-07 60.8 91 44.0
SalBow2G3261 Salvia bowleyana HOM05D000062 ORTHO05D001642 2.1e-07 60.8 87 43.7
vmacro16953 Vaccinium macrocarpon HOM05D000062 ORTHO05D001642 2.1e-07 60.8 89 44.9
EL10Ac9g21999 Beta vulgaris HOM05D000062 ORTHO05D001642 2.8e-07 60.5 96 43.8
CAN.G12.25 Capsicum annuum HOM05D000062 ORTHO05D001642 2.8e-07 60.5 91 48.4
Cpa.g.sc68.26 Carica papaya HOM05D000062 ORTHO05D001642 2.8e-07 60.5 89 43.8
Lj9A507G79 Lonicera japonica HOM05D000062 ORTHO05D001642 2.8e-07 60.5 91 42.9
CiPaw.02G151000 Carya illinoinensis HOM05D000062 ORTHO05D001642 3.7e-07 60.1 93 45.2
Duzib235G0646 Durio zibethinus HOM05D000062 ORTHO05D001642 3.7e-07 60.1 91 47.3
THA.LOC104800433 Tarenaya hassleriana HOM05D000062 ORTHO05D001642 4.8e-07 59.7 90 47.8
THA.LOC104813558 Tarenaya hassleriana HOM05D000062 ORTHO05D001642 4.8e-07 59.7 90 46.7
Thecc.06G087100 Theobroma cacao HOM05D000062 ORTHO05D001642 4.8e-07 59.7 91 46.2
GSVIVG01017110001 Vitis vinifera HOM05D000062 ORTHO05D001642 4.8e-07 59.7 90 43.3
CAN.G12.27 Capsicum annuum HOM05D000062 ORTHO05D001642 6.2e-07 59.3 91 44.0
Rhsim12G0197900 Rhododendron simsii HOM05D000062 ORTHO05D001642 6.2e-07 59.3 89 44.9
SGA_v2.0_scaffold37G14821 Striga asiatica HOM05D000062 ORTHO05D001642 6.2e-07 59.3 89 49.4
THA.LOC104812519 Tarenaya hassleriana HOM05D000062 ORTHO05D001642 6.2e-07 59.3 90 44.4
Haze_16430 Corylus avellana HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 46.2
Dinv30511 Davidia involucrata HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 42.9
Dinv38047 Davidia involucrata HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 44.0
Duzib160G0121 Durio zibethinus HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 44.0
Gorai.011G076800 Gossypium raimondii HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 45.1
QL05p024229 Quercus lobata HOM05D000062 ORTHO05D001642 8.1e-07 58.9 91 42.9
TAR636G0861 Trochodendron aralioides HOM05D000062 ORTHO05D001642 8.1e-07 58.9 90 45.6
MSTRG.11078 Avicennia marina HOM05D000062 ORTHO05D001642 1.1e-06 58.5 87 44.8
Gohir.D10G071500 Gossypium hirsutum HOM05D000062 ORTHO05D001642 1.1e-06 58.5 91 45.1
MSTRG.22691 Avicennia marina HOM05D000062 ORTHO05D001642 1.4e-06 58.2 92 39.1
Sopen12g022370 Solanum pennellii HOM05D000062 ORTHO05D001642 1.4e-06 58.2 91 46.2
PGSC0003DMG402031379 Solanum tuberosum HOM05D000062 ORTHO05D001642 1.4e-06 58.2 91 46.2
CSS0015586 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D001642 1.8e-06 57.8 91 42.9
Cfa002065 Carpinus fangiana HOM05D000062 ORTHO05D001642 1.8e-06 57.8 91 46.2
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.8e-06 57.8 42 66.7
unitig_62.g23771 Utricularia gibba HOM05D000062 ORTHO05D001642 1.8e-06 57.8 89 43.8
Gohir.D09G082900 Gossypium hirsutum HOM05D000062 ORTHO05D001642 2.4e-06 57.4 91 44.0
Gorai.006G098500 Gossypium raimondii HOM05D000062 ORTHO05D001642 2.4e-06 57.4 91 44.0
Lsat_1_v5_gn_5_130581 Lactuca sativa HOM05D000062 ORTHO05D001642 2.4e-06 57.4 84 46.4
Rhsim12G0198100 Rhododendron simsii HOM05D000062 ORTHO05D001642 2.4e-06 57.4 89 44.9
Manes.11G047600 Manihot esculenta HOM05D000062 ORTHO05D001642 3.1e-06 57.0 91 42.9
Nn2g11779 Nelumbo nucifera HOM05D000062 ORTHO05D001642 3.1e-06 57.0 91 44.0
Nn8g39219 Nelumbo nucifera HOM05D000062 ORTHO05D001642 3.1e-06 57.0 91 46.2
Sed0021484 Sechium edule HOM05D000062 ORTHO05D001642 4.0e-06 56.6 90 44.4
Lj3g0007822 Lotus japonicus HOM05D000062 ORTHO05D001642 6.9e-06 55.8 86 46.5
Nitab4.5_0011140g0010 Nicotiana tabacum HOM05D000062 ORTHO05D001642 6.9e-06 55.8 91 45.1
Duzib192G0354 Durio zibethinus HOM05D000062 ORTHO05D001642 9.0e-06 55.5 88 44.3


User provided reference genes

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