Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.9e-126 454.9 306 100.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.3e-102 377.1 307 82.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 4.5e-79 298.9 314 75.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.5e-31 139.4 158 52.5
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.7e-31 138.7 167 52.1
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.5e-29 132.5 171 48.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.2e-28 131.3 166 48.8
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.6e-28 129.8 164 50.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 6.1e-28 129.0 137 54.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 6.1e-28 129.0 169 50.9
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 6.1e-28 129.0 158 48.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.8e-27 127.5 129 59.7
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-27 127.5 295 37.6
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.0e-27 126.7 168 48.8
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 4.0e-27 126.3 159 48.4
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.8e-27 125.6 173 49.1
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.8e-27 125.2 168 47.6
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-26 124.8 156 50.6
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-26 124.8 156 50.6
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.5e-26 124.4 159 48.4
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.5e-26 124.4 163 49.7
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.0e-26 124.0 134 56.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.4e-26 123.2 267 36.0
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.4e-26 123.2 166 47.0
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.4e-26 123.2 159 45.9
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.4e-26 122.9 146 52.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.4e-26 122.9 170 47.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.7e-26 122.5 174 48.9
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 7.5e-26 122.1 138 52.9
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 7.5e-26 122.1 151 52.3
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 7.5e-26 122.1 159 47.8
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.8e-26 121.7 170 47.1
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 9.8e-26 121.7 142 50.7
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.8e-26 121.7 162 48.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.3e-25 121.3 157 51.0
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.2e-25 120.6 158 48.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.2e-25 120.6 131 54.2
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.7e-25 119.8 159 46.5
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.8e-25 119.4 174 47.7
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 8.3e-25 118.6 129 52.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 8.3e-25 118.6 126 52.4
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.1e-24 118.2 169 49.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.1e-24 118.2 169 48.5
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.4e-24 117.9 169 48.5
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 3.1e-24 116.7 142 50.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.1e-24 116.7 130 56.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.1e-24 116.3 158 46.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.4e-24 115.9 159 44.7
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.4e-24 115.9 158 45.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 5.4e-24 115.9 125 52.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 7.0e-24 115.5 166 46.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-23 114.8 169 48.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.6e-23 114.4 157 46.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.0e-23 114.0 165 47.3
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.7e-23 113.6 133 56.4
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 7.7e-23 112.1 172 49.4
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-22 111.3 172 44.2
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.7e-22 110.9 124 57.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.5e-22 109.0 171 43.3
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-21 108.2 166 41.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-21 107.8 166 41.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.9e-21 107.5 192 41.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 3.2e-21 106.7 165 46.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.2e-21 106.7 124 52.4
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.2e-21 106.3 167 43.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.2e-21 106.3 166 41.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.5e-21 105.9 125 51.2
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 7.2e-21 105.5 125 53.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 7.2e-21 105.5 159 43.4
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.7e-20 103.6 120 53.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.6e-20 103.2 162 42.6
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.7e-20 102.8 129 53.5
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 8.0e-20 102.1 169 45.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.0e-19 101.7 92 65.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 6.8e-19 99.0 171 44.4
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.0e-18 97.4 166 43.4
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.6e-18 97.1 134 49.3
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.6e-18 97.1 175 43.4
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.4e-18 96.3 164 42.7
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.4e-18 96.3 172 42.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 5.7e-18 95.9 90 63.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 7.5e-18 95.5 161 43.5
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 7.5e-18 95.5 63 74.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 9.8e-18 95.1 167 43.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-17 94.7 72 66.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.3e-17 94.7 162 43.2
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.8e-17 93.6 123 48.8
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 6.3e-17 92.4 90 58.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.4e-16 91.3 120 49.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.8e-16 90.9 307 31.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.8e-16 90.9 169 42.6
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.8e-16 90.9 90 57.8
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.1e-16 90.1 161 42.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.1e-16 90.1 144 47.2
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.1e-16 89.7 307 31.3
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.1e-16 89.7 94 57.4
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 5.4e-16 89.4 138 42.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 9.1e-16 88.6 94 54.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-15 88.2 94 57.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.6e-15 87.8 94 56.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.0e-15 87.4 167 40.1
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.5e-15 86.3 167 38.9
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.5e-15 86.3 93 57.0
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.9e-15 85.9 95 50.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.3e-14 84.7 55 74.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.9e-14 83.6 137 43.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.5e-13 81.3 146 40.4
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.9e-13 80.9 159 39.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 5.5e-13 79.3 127 44.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 9.5e-13 78.6 116 44.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.8e-12 77.0 159 39.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 6.1e-12 75.9 163 39.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-11 74.7 51 68.6
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.8e-11 74.3 166 38.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.0e-11 73.6 41 87.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 7.5e-10 68.9 185 30.8
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 9.8e-10 68.6 96 46.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 8.3e-09 65.5 46 67.4
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.4e-08 64.7 95 44.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.4e-08 64.7 95 44.2
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.4e-08 63.9 103 40.8
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 3.2e-08 63.5 95 44.2
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 9.2e-08 62.0 168 33.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 9.2e-08 62.0 120 45.0
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 9.2e-08 62.0 124 40.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.2e-07 61.6 164 33.5
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.5e-07 60.1 169 34.3


User provided reference genes

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