Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 0.0e+00 1316.2 680 100.0
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 8.4e-294 1013.4 532 99.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.1e-234 817.0 679 63.2
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 5.7e-234 814.7 680 61.8
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.4e-232 809.3 679 61.4
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.0e-231 806.2 676 61.1
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 3.5e-231 805.4 680 61.6
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.5e-231 805.4 689 61.4
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.9e-231 804.7 682 61.0
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 5.9e-231 804.7 682 61.0
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.0e-230 803.9 676 62.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.0e-230 803.9 688 61.6
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.3e-230 803.5 674 59.9
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.7e-230 803.1 684 61.4
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.9e-230 802.4 698 60.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.8e-230 802.0 678 60.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 3.8e-230 802.0 680 61.0
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 6.5e-230 801.2 677 61.2
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.5e-229 800.0 675 61.3
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.5e-229 800.0 678 61.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.5e-229 800.0 678 61.7
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.9e-229 799.7 697 59.8
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.2e-229 798.5 651 62.7
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 4.2e-229 798.5 672 60.9
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 9.4e-229 797.3 687 58.8
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.1e-228 796.2 674 60.8
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 3.6e-228 795.4 686 60.6
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.6e-228 795.4 676 59.6
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 4.7e-228 795.0 672 60.6
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.0e-227 793.9 682 60.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 5.2e-227 791.6 694 59.7
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.2e-226 790.4 674 61.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.6e-226 789.3 679 61.1
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 9.7e-226 787.3 670 58.8
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.7e-225 785.4 683 58.9
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 3.1e-224 782.3 680 59.4
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.2e-223 780.4 687 60.4
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.2e-223 780.4 687 60.4
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.2e-223 780.4 688 60.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.0e-222 777.3 687 59.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.3e-222 776.9 698 57.0
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.7e-222 776.5 679 59.1
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 3.8e-222 775.4 687 58.5
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.1e-221 773.9 682 60.0
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-221 772.7 638 61.6
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.6e-220 770.0 687 58.4
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.1e-220 769.6 736 56.7
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.8e-219 766.5 644 62.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 4.0e-219 765.4 688 59.0
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.6e-218 762.7 688 59.4
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 9.8e-218 760.8 719 56.2
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.3e-217 760.4 715 55.9
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 6.3e-217 758.1 679 58.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.4e-216 756.9 715 55.8
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 5.4e-216 755.0 647 59.4
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 2.0e-215 753.1 680 58.2
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.7e-215 752.7 439 82.0
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.9e-215 751.5 679 57.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 5.9e-215 751.5 682 57.6
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-214 750.0 721 54.8
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 3.8e-214 748.8 681 57.1
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 5.0e-214 748.4 684 57.3
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 5.0e-214 748.4 692 58.1
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 6.6e-214 748.0 645 60.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.3e-213 745.7 682 57.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 3.3e-213 745.7 692 56.4
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 7.2e-213 744.6 667 57.6
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.6e-212 743.4 684 57.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.0e-211 740.7 695 56.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.3e-211 739.6 672 57.1
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.0e-211 739.2 670 57.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 4.4e-210 735.3 683 58.0
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 5.7e-210 734.9 668 57.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.7e-209 733.4 685 58.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 3.1e-208 729.2 691 57.2
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 4.1e-208 728.8 681 56.5
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.1e-208 728.8 683 55.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 3.5e-207 725.7 681 56.4
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 4.5e-207 725.3 681 56.4
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.3e-206 723.8 686 55.8
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 5.0e-206 721.8 638 60.2
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 8.6e-206 721.1 682 56.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-205 720.7 682 56.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 9.8e-202 707.6 690 55.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 6.4e-201 704.9 690 55.4
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-200 704.1 685 55.5
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.1e-200 704.1 685 55.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 2.0e-199 699.9 670 55.8
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.1e-197 694.1 682 55.1
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 9.5e-197 691.0 710 53.8
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.8e-196 689.5 574 61.0
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 5.2e-195 685.3 511 66.9
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 4.3e-189 665.6 722 49.7
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.8e-187 658.3 1007 40.7
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.6e-186 656.4 662 51.2
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-183 647.5 683 53.0
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.9e-182 642.5 703 46.9
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 8.6e-182 641.3 444 68.7
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 4.4e-178 629.0 504 61.3
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 4.6e-175 619.0 682 51.3
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 4.0e-171 605.9 674 48.4
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.6e-167 592.4 438 66.0
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.5e-162 577.4 817 42.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.3e-156 557.8 542 54.2
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 6.2e-156 555.4 644 49.8
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.1e-151 540.4 663 43.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-149 533.9 681 47.0
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 5.9e-138 495.7 560 49.1
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.3e-133 479.6 669 41.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 1.7e-132 477.6 705 39.0
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 3.7e-132 476.5 552 49.3
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.6e-109 400.6 538 40.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-103 381.7 432 48.1
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.2e-102 376.3 445 47.9
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 7.0e-91 339.3 301 59.8
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.6e-89 332.4 415 46.7
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.6e-79 300.4 433 42.3
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 6.2e-79 299.7 613 33.4
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.1e-70 272.3 215 62.8
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-70 271.9 301 47.8
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-68 264.2 371 41.5
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.0e-65 254.2 652 32.7
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-58 230.7 246 46.3
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.6e-58 230.3 255 50.2
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.3e-56 223.8 262 47.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-51 209.1 139 74.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.0e-49 202.6 106 93.4
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-47 195.7 190 51.6
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 9.9e-45 186.0 105 79.0
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 9.9e-45 186.0 358 37.2
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-42 179.1 131 64.1
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.0e-41 174.5 122 68.9
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.8e-39 167.9 268 44.8
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 1.1e-38 166.0 250 44.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-37 162.5 259 45.2
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 2.6e-37 161.4 259 44.8
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 8.7e-33 146.4 149 53.7
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 4.3e-32 144.1 118 61.9
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 5.7e-32 143.7 236 44.1
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-30 139.4 176 44.3
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 5.3e-30 137.1 227 38.8
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 9.0e-30 136.3 119 60.5
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-29 135.6 101 60.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 4.5e-29 134.0 101 59.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.9e-28 131.3 208 37.5
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.0e-28 130.6 190 42.1
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-27 128.3 117 48.7
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-26 125.9 79 69.6
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.1e-26 125.2 87 64.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.1e-26 125.2 87 64.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.1e-26 125.2 87 64.4
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-26 124.8 70 77.1
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.5e-26 124.4 86 64.0
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 3.9e-25 120.9 64 89.1
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-25 120.6 79 65.8
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 5.1e-25 120.6 67 85.1
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 8.7e-25 119.8 64 87.5
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-23 115.5 70 70.0
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 4.1e-22 110.9 163 45.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.2e-19 100.1 102 50.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 6.1e-18 97.1 97 52.6
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 7.9e-18 96.7 62 71.0
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-17 94.4 70 62.9
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-17 94.4 62 71.0
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-16 92.8 105 47.6
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 2.5e-16 91.7 55 74.5
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 2.2e-15 88.6 85 51.8
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 2.8e-15 88.2 96 45.8
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 7.7e-13 80.1 55 61.8
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-12 79.3 63 61.9
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 6.5e-12 77.0 47 72.3
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 9.4e-11 73.2 58 62.1
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.2e-10 72.8 77 53.2
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-10 72.8 188 34.6
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 2.7e-10 71.6 49 69.4
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 2.7e-10 71.6 49 69.4
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.4e-09 69.3 45 64.4
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 9.7e-08 63.2 39 71.8
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-07 62.4 68 61.8
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.2e-07 62.0 36 69.4
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-07 61.2 194 32.0
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 1.1e-06 59.7 34 76.5
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.4e-06 59.3 174 27.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.1e-06 58.2 109 38.5
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 5.3e-06 57.4 123 31.7


User provided reference genes

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