Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb367930 Zea mays HOM05D001415 ORTHO05D001075 6.3e-35 150.2 75 100.0
Os01g0844200 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 6.5e-16 87.0 76 67.1
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 1.0e-08 63.2 32 84.4
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 1.3e-08 62.8 32 84.4
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 2.2e-08 62.0 32 81.2
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.2e-08 62.0 32 81.2
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.2e-08 62.0 35 74.3
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 2.2e-08 62.0 32 81.2
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.2e-08 62.0 32 81.2
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.9e-08 61.6 32 78.1
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.8e-08 61.2 32 81.2
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.8e-08 61.2 32 81.2
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 3.8e-08 61.2 32 81.2
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 3.8e-08 61.2 32 81.2
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 3.8e-08 61.2 58 62.1
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 5.0e-08 60.8 31 83.9
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 81.2
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 5.0e-08 60.8 32 78.1
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 6.5e-08 60.5 32 78.1
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 6.5e-08 60.5 32 75.0
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 6.5e-08 60.5 32 75.0
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 6.5e-08 60.5 32 78.1
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 6.5e-08 60.5 31 80.6
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.5e-08 60.1 32 78.1
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 8.5e-08 60.1 32 78.1
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.5e-08 60.1 37 73.0
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.5e-08 60.1 39 69.2
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 8.5e-08 60.1 39 69.2
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 8.5e-08 60.1 32 81.2
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 1.1e-07 59.7 40 67.5
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 1.1e-07 59.7 35 74.3
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 1.1e-07 59.7 42 61.9
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.1e-07 59.7 39 69.2
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.5e-07 59.3 32 75.0
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 1.5e-07 59.3 32 75.0
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-07 59.3 37 70.3
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-07 59.3 37 70.3
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-07 59.3 37 70.3
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 1.5e-07 59.3 37 73.0
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 1.5e-07 59.3 32 75.0
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 1.9e-07 58.9 39 66.7
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 1.9e-07 58.9 39 69.2
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 1.9e-07 58.9 33 75.8
Os03g0272900 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 1.9e-07 58.9 50 62.0
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 75.0
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 1.9e-07 58.9 32 78.1
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 2.5e-07 58.5 42 61.9
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 2.5e-07 58.5 39 66.7
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 78.1
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 75.0
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 2.5e-07 58.5 30 83.3
HPP92_018137 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.5e-07 58.5 32 78.1
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.2e-07 58.2 30 80.0
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.2e-07 58.2 31 77.4
Phvul.009G260600 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.2e-07 58.2 45 60.0
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 3.2e-07 58.2 33 75.8
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.2e-07 57.8 42 61.9
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 75.0
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 4.2e-07 57.8 40 67.5
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 4.2e-07 57.8 41 68.3
Os05g0458200 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 4.2e-07 57.8 70 47.1
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.2e-07 57.8 32 78.1
Thecc.06G132000 Theobroma cacao HOM05D001415 ORTHO05D001075 4.2e-07 57.8 41 65.9
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 5.5e-07 57.4 32 71.9
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 7.2e-07 57.0 34 67.6
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 7.2e-07 57.0 33 69.7
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 9.4e-07 56.6 33 69.7
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 9.4e-07 56.6 39 66.7
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 9.4e-07 56.6 37 67.6
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 9.4e-07 56.6 34 64.7
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 9.4e-07 56.6 32 75.0
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 9.4e-07 56.6 32 75.0
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 9.4e-07 56.6 46 60.9
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.4e-07 56.6 56 58.9
HPP92_027005 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.4e-07 56.6 55 56.4
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.2e-06 56.2 32 71.9
Duzib192G0302 Durio zibethinus HOM05D001415 ORTHO05D001075 1.2e-06 56.2 41 63.4
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 1.2e-06 56.2 40 65.0
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.2e-06 56.2 58 53.4
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.2e-06 56.2 34 64.7
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 71.9
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 71.9
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 75.0
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 71.9
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 71.9
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.6e-06 55.8 37 67.6
Gohir.A05G142400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-06 55.8 43 65.1
Gorai.009G148600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.6e-06 55.8 43 65.1
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 68.8
Os12g0573600 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 1.6e-06 55.8 36 75.0
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 2.1e-06 55.5 33 66.7
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.1e-06 55.5 33 66.7
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.1e-06 55.5 32 71.9
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.1e-06 55.5 33 66.7
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.1e-06 55.5 33 66.7
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.1e-06 55.5 37 67.6
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 2.7e-06 55.1 33 75.8
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 65.6
MELO3C024301.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.6e-06 54.7 44 61.4
CsaV3_7G033880 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.6e-06 54.7 43 58.1
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.6e-06 54.7 35 62.9
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 3.6e-06 54.7 32 75.0
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 3.6e-06 54.7 32 68.8
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.6e-06 54.7 41 63.4
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.6e-06 54.7 58 50.0
Mapoly0151s0015 Marchantia polymorpha HOM05D008941 ORTHO05D010842 3.6e-06 54.7 64 45.3
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.6e-06 54.7 34 64.7
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.6e-06 54.7 34 61.8
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 3.6e-06 54.7 56 58.9
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 3.6e-06 54.7 33 66.7
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 4.7e-06 54.3 31 71.0
CiPaw.01G210100 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.7e-06 54.3 41 58.5
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 4.7e-06 54.3 67 47.8
Gohir.D05G144700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.7e-06 54.3 43 62.8
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.7e-06 54.3 41 61.0
Oeu012944.2 Olea europaea HOM05D001415 ORTHO05D001075 4.7e-06 54.3 37 70.3
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 4.7e-06 54.3 32 65.6
THA.LOC104810403 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.7e-06 54.3 32 71.9
THA.LOC104822609 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.7e-06 54.3 33 69.7
AagrBONN_evm.TU.Sc2ySwM_368.1140 Anthoceros agrestis HOM05D008584 ORTHO05D010813 6.1e-06 53.9 30 73.3
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 6.1e-06 53.9 33 63.6
Gohir.D06G147900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.1e-06 53.9 41 61.0
Gorai.010G172400 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.1e-06 53.9 41 61.0
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 6.1e-06 53.9 58 50.0
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 6.1e-06 53.9 32 65.6
RcHm_v2.0_Chr2g0148241 Rosa chinensis HOM05D001415 ORTHO05D001075 6.1e-06 53.9 29 75.9
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 6.1e-06 53.9 59 47.5
HPP92_001492 Vanilla planifolia HOM05D001415 ORTHO05D001075 6.1e-06 53.9 40 62.5
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 8.0e-06 53.5 60 50.0
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 8.0e-06 53.5 35 65.7
COL.COLO4_30888 Corchorus olitorius HOM05D001415 ORTHO05D001075 8.0e-06 53.5 40 60.0
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.0e-06 53.5 30 76.7
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 8.0e-06 53.5 30 76.7
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.0e-06 53.5 41 61.0
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 8.0e-06 53.5 34 55.9
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 8.0e-06 53.5 33 63.6
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 8.0e-06 53.5 41 58.5
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 8.0e-06 53.5 41 58.5
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 8.0e-06 53.5 33 63.6
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 8.0e-06 53.5 33 63.6


User provided reference genes

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