Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb367080 Zea mays HOM05D004176 ORTHO05D004845 7.5e-127 457.2 233 100.0
Zm00001eb309690 Zea mays HOM05D004176 ORTHO05D004845 9.6e-74 280.8 188 79.3
Zm00001eb135180 Zea mays HOM05D004176 ORTHO05D004845 6.4e-54 214.9 114 93.9
Zm00001eb106910 Zea mays HOM05D004176 ORTHO05D004845 5.1e-51 205.3 104 97.1
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 7.4e-50 201.4 104 93.3
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 8.7e-43 177.9 103 77.7
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 1.5e-42 177.2 105 78.1
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 3.3e-42 176.0 103 78.6
HPP92_001807 Vanilla planifolia HOM05D004176 ORTHO05D004845 4.3e-42 175.6 103 77.7
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 7.4e-42 174.9 103 76.7
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 9.7e-42 174.5 103 76.7
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.3e-41 174.1 103 74.8
MD05G1324800 Malus domestica HOM05D004176 ORTHO05D004845 1.6e-41 173.7 104 76.9
TPR.G36758 Trifolium pratense HOM05D004176 ORTHO05D004845 1.6e-41 173.7 103 75.7
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 2.2e-41 173.3 103 76.7
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.2e-41 173.3 103 76.7
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 2.2e-41 173.3 105 75.2
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 3.7e-41 172.6 103 75.7
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 4.8e-41 172.2 103 74.8
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 8.2e-41 171.4 103 73.8
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 8.2e-41 171.4 103 75.7
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 8.2e-41 171.4 103 78.6
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 73.8
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 73.8
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 72.8
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 74.8
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 75.7
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 1.1e-40 171.0 103 76.7
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 1.4e-40 170.6 103 75.7
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 1.4e-40 170.6 103 74.8
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.4e-40 170.6 103 74.8
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 1.8e-40 170.2 103 75.7
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 1.8e-40 170.2 103 74.8
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 2.4e-40 169.9 103 72.8
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 3.1e-40 169.5 103 75.7
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 4.1e-40 169.1 103 74.8
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 4.1e-40 169.1 103 73.8
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 1.2e-39 167.5 103 71.8
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 1.2e-39 167.5 103 72.8
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 1.5e-39 167.2 103 71.8
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 2.0e-39 166.8 103 73.8
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 2.0e-39 166.8 103 72.8
Atru.chr10.2000 Acer truncatum HOM05D004176 ORTHO05D004845 2.6e-39 166.4 103 73.8
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 3.4e-39 166.0 103 71.8
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 4.5e-39 165.6 103 70.9
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 4.5e-39 165.6 103 72.8
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 4.5e-39 165.6 107 68.2
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 5.9e-39 165.2 103 72.8
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 5.9e-39 165.2 103 74.8
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 5.9e-39 165.2 103 72.8
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 7.6e-39 164.9 103 69.9
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 7.6e-39 164.9 103 73.8
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 7.6e-39 164.9 103 73.8
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 7.6e-39 164.9 103 72.8
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 1.0e-38 164.5 103 74.8
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 1.0e-38 164.5 103 69.9
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.0e-38 164.5 103 72.8
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 1.3e-38 164.1 103 71.8
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.7e-38 163.7 103 70.9
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 2.2e-38 163.3 103 70.9
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 2.2e-38 163.3 103 70.9
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 2.9e-38 162.9 103 73.8
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 3.8e-38 162.5 103 69.9
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 3.8e-38 162.5 103 72.8
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 3.8e-38 162.5 103 71.8
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 5.0e-38 162.2 103 70.9
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 5.0e-38 162.2 103 68.9
SEGI_19486 Sequoiadendron giganteum HOM05D004176 ORTHO05D004845 5.0e-38 162.2 103 73.8
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 6.5e-38 161.8 103 71.8
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 8.5e-38 161.4 103 68.0
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 8.5e-38 161.4 103 69.9
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.1e-37 161.0 103 69.9
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 1.1e-37 161.0 103 70.9
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.1e-37 161.0 103 70.9
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 1.4e-37 160.6 103 68.9
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 1.4e-37 160.6 103 68.0
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 1.4e-37 160.6 103 68.0
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 1.4e-37 160.6 103 70.9
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 1.9e-37 160.2 103 71.8
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.9e-37 160.2 103 72.8
Nitab4.5_0021410g0010 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.9e-37 160.2 103 72.8
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 1.9e-37 160.2 103 68.9
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 2.5e-37 159.8 103 71.8
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 2.5e-37 159.8 103 68.0
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 3.2e-37 159.5 103 70.9
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 3.2e-37 159.5 103 68.9
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 3.2e-37 159.5 103 69.9
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 4.2e-37 159.1 103 69.9
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 5.5e-37 158.7 103 68.9
Cpa.g.sc1170.1 Carica papaya HOM05D004176 ORTHO05D004845 5.5e-37 158.7 103 69.9
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 5.5e-37 158.7 103 71.8
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 5.5e-37 158.7 103 69.9
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 7.2e-37 158.3 103 66.0
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 9.3e-37 157.9 103 69.9
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.2e-36 157.5 103 69.9
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 1.2e-36 157.5 103 69.9
Sed0001897 Sechium edule HOM05D004176 ORTHO05D004845 1.2e-36 157.5 103 66.0
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 1.6e-36 157.1 103 68.9
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 2.1e-36 156.8 105 65.7
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 2.1e-36 156.8 103 69.9
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 3.6e-36 156.0 103 67.0
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 3.6e-36 156.0 103 67.0
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 3.6e-36 156.0 103 69.9
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 4.6e-36 155.6 103 68.9
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 6.1e-36 155.2 103 68.9
Lsat_1_v5_gn_1_126440 Lactuca sativa HOM05D004176 ORTHO05D004845 6.1e-36 155.2 103 67.0
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 1.0e-35 154.5 103 66.0
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 3.0e-35 152.9 109 67.9
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 5.1e-35 152.1 103 66.0
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 5.1e-35 152.1 103 66.0
CDE05G0007 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 8.7e-35 151.4 104 66.3
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 1.5e-34 150.6 103 66.0
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 1.5e-34 150.6 103 66.0
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 1.9e-34 150.2 103 66.0
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 2.5e-34 149.8 103 66.0
SMO361G0397 Selaginella moellendorffii HOM05D004176 ORTHO05D004845 5.7e-34 148.7 115 60.9
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 7.4e-34 148.3 103 65.0
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 7.4e-34 148.3 103 65.0
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 7.4e-34 148.3 103 64.1
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 9.7e-34 147.9 103 66.0
BcaNung00853 Brassica carinata HOM05D004176 ORTHO05D004845 1.3e-33 147.5 103 64.1
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 1.3e-33 147.5 103 64.1
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 1.3e-33 147.5 103 64.1
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 1.7e-33 147.1 103 62.1
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 2.2e-33 146.7 103 62.1
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 2.2e-33 146.7 103 66.0
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 3.7e-33 146.0 103 62.1
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 3.7e-33 146.0 103 64.1
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 8.2e-33 144.8 103 63.1
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 8.2e-33 144.8 103 63.1
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 1.8e-32 143.7 103 62.1
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 3.1e-32 142.9 103 62.1
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 6.9e-32 141.7 103 60.2
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 4.5e-31 139.0 103 63.1
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 5.9e-31 138.7 104 62.5
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 5.9e-31 138.7 103 63.1
BolC7t45624H Brassica oleracea HOM05D004176 ORTHO05D004845 7.7e-31 138.3 104 62.5
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 7.7e-31 138.3 103 61.2
Pp3c10_6970 Physcomitrium patens HOM05D004176 ORTHO05D004845 1.7e-30 137.1 107 61.7
TAR626G1911 Trochodendron aralioides HOM05D004176 ORTHO05D004845 3.2e-29 132.9 91 67.0
unitig_37.g12341 Utricularia gibba HOM05D004176 ORTHO05D001465 1.8e-24 117.1 103 59.2
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 1.2e-23 114.4 100 53.0
ClCG01G022660 Citrullus lanatus HOM05D004176 ORTHO05D004845 3.4e-23 112.8 74 68.9
Actinidia01934 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.7e-22 110.5 103 52.4
DCAR_024887 Daucus carota HOM05D004176 ORTHO05D004845 5.0e-22 109.0 74 66.2
EL10Ac8g20615 Beta vulgaris HOM05D004176 ORTHO05D004845 2.1e-20 103.6 103 52.4
Zm00001eb084780 Zea mays HOM05D024937 ORTHO05D002661 1.8e-16 90.5 59 79.7
Glyma.13G246000 Glycine max HOM05D004176 ORTHO05D004845 1.2e-15 87.8 64 65.6
PRCOL_00005757 Prasinoderma coloniale HOM05D004176 ORTHO05D004845 7.7e-15 85.1 119 41.2
MCO02G016 Micromonas commoda HOM05D004176 ORTHO05D004845 1.0e-14 84.7 101 41.6
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 4.2e-13 79.3 38 94.7
CAN.G491.5 Capsicum annuum HOM05D004176 ORTHO05D004845 1.2e-12 77.8 83 45.8
Cre12.g530550 Chlamydomonas reinhardtii HOM05D004176 ORTHO05D004845 6.7e-11 72.0 134 33.6
CAN.G450.4 Capsicum annuum HOM05D004176 ORTHO05D004845 1.5e-10 70.9 53 50.9
RcHm_v2.0_Chr5g0007951 Rosa chinensis HOM05D004176 ORTHO05D004845 1.5e-10 70.9 103 42.7
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 1.0e-06 58.2 95 38.9
Nn3g18734 Nelumbo nucifera HOM05D004444 ORTHO05D005246 1.7e-06 57.4 95 40.0
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 1.7e-06 57.4 95 38.9
Zm00001eb172780 Zea mays HOM05D004444 ORTHO05D005246 2.2e-06 57.0 95 37.9
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 2.9e-06 56.6 95 37.9
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 3.8e-06 56.2 95 38.9
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 3.8e-06 56.2 95 37.9
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 3.8e-06 56.2 95 37.9
Nitab4.5_0005808g0020 Nicotiana tabacum HOM05D004444 ORTHO05D005246 5.0e-06 55.8 95 38.9
TAR375G0344 Trochodendron aralioides HOM05D004444 ORTHO05D005246 5.0e-06 55.8 95 38.9
Atru.chr11.7 Acer truncatum HOM05D004444 ORTHO05D005246 6.5e-06 55.5 95 37.9
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 6.5e-06 55.5 95 37.9
DCAR_009036 Daucus carota HOM05D004444 ORTHO05D005246 6.5e-06 55.5 95 38.9
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 6.5e-06 55.5 95 37.9
ATR0810G148 Amborella trichopoda HOM05D004444 ORTHO05D005246 8.5e-06 55.1 95 37.9
unitig_61.g26366 Utricularia gibba HOM05D004444 ORTHO05D005246 8.5e-06 55.1 95 37.9


User provided reference genes

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