Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 4.3e-246 854.4 481 100.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 4.8e-213 744.6 482 86.1
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 2.0e-195 686.0 498 78.5
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.5e-163 578.9 488 67.4
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 6.0e-163 578.2 492 62.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 5.1e-162 575.1 483 64.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.5e-161 573.5 492 65.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.9e-161 573.2 483 63.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.3e-161 572.4 487 66.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.3e-161 572.4 484 65.3
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.3e-161 572.4 498 62.0
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 9.6e-161 570.9 488 63.1
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 9.6e-161 570.9 489 64.8
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.2e-160 570.5 507 62.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.6e-160 570.1 487 63.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.6e-160 570.1 482 64.9
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.1e-160 569.7 487 63.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.8e-160 569.3 491 62.9
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.8e-160 569.3 490 62.9
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 8.9e-159 564.3 475 67.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.2e-158 563.9 487 61.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.0e-158 563.1 490 61.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.6e-158 562.8 489 62.6
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.4e-158 562.4 499 62.1
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.7e-157 560.1 473 64.7
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.2e-157 559.7 482 62.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.9e-157 559.3 494 60.7
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.9e-157 559.3 499 61.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.8e-157 558.9 486 64.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.8e-157 558.9 503 62.0
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.8e-157 558.9 482 61.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 6.4e-157 558.1 500 61.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 6.4e-157 558.1 487 62.4
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-156 557.4 482 62.4
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.1e-156 557.4 489 61.6
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.4e-156 557.0 483 60.9
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.4e-156 557.0 497 61.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-156 556.6 487 63.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.9e-156 556.6 342 79.2
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 3.2e-156 555.8 489 61.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.2e-156 555.4 481 62.6
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 4.2e-156 555.4 483 62.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.2e-156 555.4 342 79.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.2e-156 555.4 488 63.9
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 5.4e-156 555.1 478 65.1
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 5.4e-156 555.1 486 61.5
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 9.2e-156 554.3 485 61.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.2e-156 554.3 484 62.4
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.6e-155 553.5 485 62.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.6e-155 553.5 485 64.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-155 553.1 474 64.3
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-155 553.1 474 64.3
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-155 552.7 481 62.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.7e-155 552.7 474 64.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.5e-155 552.4 487 61.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.5e-155 552.4 487 61.8
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.5e-155 552.4 473 62.8
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 3.5e-155 552.4 341 78.6
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 4.6e-155 552.0 489 61.8
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.6e-155 552.0 337 79.8
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.8e-155 551.2 484 62.2
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.0e-154 550.8 519 60.5
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-154 550.4 482 61.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-154 550.1 488 60.9
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.7e-154 550.1 483 64.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.9e-154 548.9 483 63.4
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.1e-154 548.5 502 60.6
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 8.7e-154 547.7 488 61.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.5e-153 547.0 485 66.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.5e-153 546.2 330 80.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.6e-153 544.3 337 79.2
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.3e-152 543.9 478 66.3
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.6e-152 543.5 473 67.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.6e-152 543.5 477 65.0
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.6e-152 543.5 484 62.2
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-152 543.1 482 66.0
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.1e-152 543.1 483 59.4
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.1e-152 543.1 522 59.0
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.6e-152 542.3 482 67.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.6e-152 542.3 331 78.5
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 4.8e-152 542.0 356 74.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 6.2e-152 541.6 338 77.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 6.2e-152 541.6 342 76.9
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 8.1e-152 541.2 479 61.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 8.1e-152 541.2 481 67.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 8.1e-152 541.2 482 63.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 8.1e-152 541.2 485 64.3
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.1e-151 540.8 484 63.0
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.1e-151 540.8 468 68.4
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.4e-151 540.4 331 78.9
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.4e-151 539.7 483 60.0
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.4e-151 539.7 492 58.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-151 539.7 342 76.6
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-151 539.7 342 76.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.4e-151 539.7 496 62.1
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.4e-151 539.7 387 70.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.3e-151 538.5 471 61.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.2e-150 537.3 339 77.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.5e-150 537.0 487 62.0
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.6e-150 536.2 491 59.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.4e-150 535.8 344 76.2
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 9.9e-150 534.3 412 67.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.9e-149 532.7 509 58.3
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.9e-148 530.0 541 54.3
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.4e-148 528.5 332 77.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-147 527.3 341 75.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.1e-147 526.6 478 61.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.5e-145 520.4 341 74.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 4.8e-144 515.4 467 61.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.8e-144 515.4 355 73.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.2e-142 510.8 483 58.2
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-142 510.0 494 59.3
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 4.9e-141 505.4 495 56.8
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.1e-140 504.2 475 58.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.4e-140 503.8 331 74.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.2e-140 502.7 274 86.9
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 9.3e-140 501.1 441 61.5
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.5e-139 499.2 407 63.9
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.3e-138 496.5 274 85.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.0e-138 496.1 471 58.2
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.6e-137 491.9 492 56.9
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.2e-136 488.4 499 54.1
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.1e-135 487.6 348 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.0e-133 481.1 338 71.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.3e-133 480.7 483 57.3
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 2.9e-133 479.6 304 77.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 3.2e-132 476.1 478 59.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 3.0e-130 469.5 518 53.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 3.9e-130 469.2 500 54.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 5.8e-126 455.3 421 60.1
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.5e-125 451.8 428 56.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.3e-122 443.4 414 58.5
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.0e-122 443.0 413 54.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.9e-122 442.6 333 67.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.8e-120 435.6 329 69.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-112 410.6 340 60.6
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.4e-105 385.2 566 46.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.7e-105 384.8 467 49.5
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.4e-103 380.9 336 57.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.9e-100 370.5 330 56.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-99 367.9 483 47.6
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.6e-99 366.3 454 49.1
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.7e-94 348.6 286 62.2
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.7e-91 339.3 404 50.2
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.5e-81 305.4 164 91.5
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 4.5e-78 296.2 259 58.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 9.2e-55 218.8 384 36.5
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.6e-52 209.5 343 42.3
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.7e-46 190.7 155 68.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.7e-40 171.4 177 60.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 9.3e-39 165.6 121 71.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.6e-38 164.9 120 74.2
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.3e-36 157.1 263 42.6
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.9e-31 141.4 337 32.6
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.7e-29 132.5 81 79.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-13 82.0 108 48.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.5e-09 68.6 208 27.4
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 7.6e-09 66.2 203 25.6


User provided reference genes

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