Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 7.9e-241 836.6 406 100.0
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 7.3e-178 627.5 456 71.9
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 5.6e-170 601.3 449 68.6
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 3.4e-127 459.1 385 60.8
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.4e-127 459.1 386 60.1
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 5.8e-127 458.4 397 58.9
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 9.9e-127 457.6 382 59.9
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.3e-126 457.2 393 61.3
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.9e-126 455.3 412 59.0
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 5.5e-125 451.8 385 59.7
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.7e-124 449.5 393 58.5
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 6.0e-124 448.4 390 59.0
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 7.9e-124 448.0 386 59.8
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 1.0e-123 447.6 389 59.1
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 2.3e-123 446.4 393 58.3
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 3.9e-123 445.7 432 55.1
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.7e-123 444.9 395 58.0
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.5e-122 443.7 395 58.5
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 3.3e-122 442.6 394 58.1
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.3e-122 442.6 384 58.9
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 7.4e-122 441.4 397 57.2
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 9.6e-122 441.0 384 58.1
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.3e-121 440.7 386 59.8
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.3e-121 440.7 453 52.8
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 1.6e-121 440.3 397 58.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.8e-121 438.7 445 53.0
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.1e-120 437.6 390 58.7
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.1e-120 437.6 396 57.6
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 1.1e-120 437.6 390 59.0
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 1.8e-120 436.8 392 56.9
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.0e-120 435.6 382 57.1
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 4.0e-120 435.6 390 57.9
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.3e-120 435.3 437 52.6
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 5.3e-120 435.3 455 50.8
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 6.9e-120 434.9 450 50.7
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.0e-120 434.5 396 56.8
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 9.0e-120 434.5 383 58.5
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 9.0e-120 434.5 454 50.4
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 9.0e-120 434.5 442 52.5
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.2e-119 434.1 386 58.3
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.5e-119 433.7 396 55.8
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.5e-119 433.7 379 58.3
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.5e-119 433.7 383 58.0
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 1.5e-119 433.7 391 57.3
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 2.6e-119 433.0 402 56.5
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 3.4e-119 432.6 452 51.5
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.5e-119 432.2 443 51.5
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 4.5e-119 432.2 383 58.2
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 4.5e-119 432.2 443 52.1
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 7.6e-119 431.4 382 56.3
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 7.6e-119 431.4 380 57.6
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.3e-118 430.6 382 56.8
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.3e-118 430.6 382 56.5
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 1.3e-118 430.6 382 57.9
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.7e-118 430.3 398 56.0
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.7e-118 430.3 397 55.7
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 2.2e-118 429.9 399 55.4
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 2.2e-118 429.9 386 57.8
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 2.2e-118 429.9 442 51.6
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 2.9e-118 429.5 382 56.5
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 3.8e-118 429.1 387 58.7
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 3.8e-118 429.1 438 51.8
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 8.4e-118 427.9 382 56.3
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.4e-117 427.2 390 55.6
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.9e-117 426.8 382 56.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.5e-117 426.4 387 58.1
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 5.5e-117 425.2 445 49.4
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 7.1e-117 424.9 447 51.5
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 9.3e-117 424.5 383 57.4
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 1.2e-116 424.1 385 56.9
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 2.1e-116 423.3 445 51.0
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 2.1e-116 423.3 445 50.8
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 2.7e-116 422.9 451 49.9
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 3.5e-116 422.5 451 49.9
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 3.5e-116 422.5 386 56.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.0e-115 421.0 390 55.9
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.0e-115 421.0 444 50.0
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 1.3e-115 420.6 387 55.6
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 3.9e-115 419.1 394 56.3
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 6.7e-115 418.3 444 48.9
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 6.7e-115 418.3 444 48.9
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 8.7e-115 417.9 449 50.6
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.5e-114 417.2 460 48.5
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 2.5e-114 416.4 439 50.8
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.3e-114 416.0 394 56.3
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.3e-114 416.0 394 56.3
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 4.3e-114 415.6 444 49.1
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 4.3e-114 415.6 379 56.2
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 5.7e-114 415.2 462 49.8
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 7.4e-114 414.8 445 49.9
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 7.4e-114 414.8 445 49.4
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.6e-113 413.7 444 48.9
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 1.6e-113 413.7 444 48.9
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 3.7e-113 412.5 378 56.9
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 4.8e-113 412.1 446 48.9
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 4.8e-113 412.1 378 55.8
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.3e-113 411.8 378 55.6
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 8.2e-113 411.4 484 46.9
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 8.2e-113 411.4 444 49.3
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.1e-112 411.0 416 53.1
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 1.1e-112 411.0 437 50.6
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 1.8e-112 410.2 446 48.9
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 4.1e-112 409.1 382 54.7
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 5.3e-112 408.7 445 49.0
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 5.3e-112 408.7 445 49.0
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 6.9e-112 408.3 445 49.2
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 9.0e-112 407.9 487 46.0
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 1.5e-111 407.1 435 49.7
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.0e-111 406.8 379 54.1
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 2.6e-111 406.4 394 54.8
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.6e-111 406.4 398 52.5
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 3.4e-111 406.0 447 48.5
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 3.4e-111 406.0 445 48.8
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 5.9e-111 405.2 452 48.2
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 5.9e-111 405.2 445 48.5
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 7.7e-111 404.8 380 54.2
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 1.0e-110 404.4 449 48.1
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 5.0e-110 402.1 472 45.8
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.6e-108 397.1 465 48.2
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 1.8e-107 393.7 379 53.6
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 3.0e-107 392.9 443 48.5
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.1e-106 391.0 460 47.6
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.5e-106 389.8 392 52.8
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 2.2e-102 376.7 336 58.0
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 4.8e-97 359.0 371 52.0
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 2.1e-92 343.6 438 42.7
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.1e-90 337.8 286 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 2.9e-86 323.2 361 46.3
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 3.7e-81 306.2 295 50.8
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 1.7e-78 297.4 329 49.5
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 4.2e-77 292.7 313 48.6
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 3.4e-74 283.1 199 66.8
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 4.8e-73 279.3 270 51.1
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.6e-71 274.2 306 48.4
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 5.7e-66 255.8 289 49.8
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 3.9e-62 243.0 263 50.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 1.9e-61 240.7 175 65.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.7e-54 217.6 379 36.9
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 8.1e-44 182.2 280 39.6
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.2e-40 170.2 123 64.2
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 3.5e-39 166.8 153 54.2
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.2e-36 158.3 327 33.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 4.7e-36 156.4 137 57.7
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 6.0e-23 112.8 59 88.1
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.0e-22 112.1 284 30.6
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 4.3e-21 106.7 84 64.3
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 5.6e-21 106.3 61 78.7
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 1.3e-20 105.1 154 40.9
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 1.7e-17 94.7 152 37.5
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.9e-17 94.0 77 55.8
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 4.9e-17 93.2 60 73.3
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.1e-13 82.0 69 53.6
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 3.3e-13 80.5 68 61.8
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 9.6e-13 79.0 175 31.4
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 3.7e-12 77.0 163 35.6
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 8.1e-12 75.9 68 51.5
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 2.2e-09 67.8 50 60.0
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 9.3e-08 62.4 120 36.7
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 5.1e-06 56.6 96 39.6


User provided reference genes

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