Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb339680 Zea mays HOM05D001104 ORTHO05D006285 5.0e-77 291.2 164 100.0
Zm00001eb023990 Zea mays HOM05D001104 ORTHO05D006285 6.6e-45 184.5 106 89.6
Zm00001eb296290 Zea mays HOM05D001104 ORTHO05D006285 3.6e-27 125.6 81 87.7
Zm00001eb344110 Zea mays HOM05D001104 ORTHO05D006285 3.7e-24 115.5 75 89.3
Os05g0568900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006285 3.9e-21 105.5 73 79.5
Zm00001eb313910 Zea mays HOM05D001104 ORTHO05D006285 2.5e-20 102.8 75 80.0
Dinv35070 Davidia involucrata HOM05D001104 ORTHO05D006285 8.1e-11 71.2 70 62.9
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.4e-10 69.7 101 47.5
QL02p076341 Quercus lobata HOM05D001104 ORTHO05D006285 3.1e-10 69.3 46 78.3
CiPaw.03G038700 Carya illinoinensis HOM05D001104 ORTHO05D006285 4.0e-10 68.9 61 68.9
EL10Ac4g08591 Beta vulgaris HOM05D001104 ORTHO05D006285 5.2e-10 68.6 46 78.3
Actinidia35744 Actinidia chinensis HOM05D001104 ORTHO05D006285 1.2e-09 67.4 65 61.5
MSTRG.3298 Avicennia marina HOM05D001104 ORTHO05D006285 1.2e-09 67.4 63 63.5
Cpa.g.sc215.9 Carica papaya HOM05D001104 ORTHO05D006285 1.2e-09 67.4 75 56.0
MD17G1034100 Malus domestica HOM05D001104 ORTHO05D006285 1.2e-09 67.4 93 50.5
SGA_v2.0_scaffold30G12466 Striga asiatica HOM05D001104 ORTHO05D006285 1.2e-09 67.4 61 62.3
Thecc.04G010100 Theobroma cacao HOM05D001104 ORTHO05D006285 1.2e-09 67.4 126 42.1
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.2e-09 67.4 49 73.5
SalBow7G2409 Salvia bowleyana HOM05D001104 ORTHO05D006285 1.5e-09 67.0 46 73.9
TAR629G2625 Trochodendron aralioides HOM05D001104 ORTHO05D006285 2.0e-09 66.6 62 64.5
vmacro18251 Vaccinium macrocarpon HOM05D001104 ORTHO05D006285 2.0e-09 66.6 63 63.5
AUR62034754 Chenopodium quinoa HOM05D001104 ORTHO05D006285 2.6e-09 66.2 63 63.5
Actinidia16934 Actinidia chinensis HOM05D001104 ORTHO05D006285 3.4e-09 65.9 62 64.5
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.4e-09 65.9 46 73.9
Sed0007586 Sechium edule HOM05D001104 ORTHO05D006285 3.4e-09 65.9 48 70.8
CSS0014255 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006285 4.4e-09 65.5 62 62.9
CSS0033406 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006285 4.4e-09 65.5 62 62.9
CANSAT64G2658 Cannabis sativa HOM05D001104 ORTHO05D006285 4.4e-09 65.5 106 44.3
DCAR_021687 Daucus carota HOM05D001104 ORTHO05D006285 4.4e-09 65.5 46 73.9
Lj7A592T40 Lonicera japonica HOM05D001104 ORTHO05D006285 4.4e-09 65.5 46 73.9
Manes.15G167800 Manihot esculenta HOM05D001104 ORTHO05D006285 4.4e-09 65.5 46 73.9
GSVIVG01034494001 Vitis vinifera HOM05D001104 ORTHO05D006285 4.4e-09 65.5 63 63.5
CAN.G206.27 Capsicum annuum HOM05D001104 ORTHO05D006285 5.8e-09 65.1 46 73.9
COL.COLO4_28980 Corchorus olitorius HOM05D001104 ORTHO05D006285 5.8e-09 65.1 61 63.9
Haze_14678 Corylus avellana HOM05D001104 ORTHO05D006285 5.8e-09 65.1 62 61.3
Gohir.A11G067200 Gossypium hirsutum HOM05D001104 ORTHO05D006285 5.8e-09 65.1 64 60.9
Gohir.D11G071100 Gossypium hirsutum HOM05D001104 ORTHO05D006285 5.8e-09 65.1 64 60.9
Gorai.007G076400 Gossypium raimondii HOM05D001104 ORTHO05D006285 5.8e-09 65.1 64 60.9
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.6e-09 64.7 62 61.3
Hma1.2p1_0993F.1_g245470 Hydrangea macrophylla HOM05D001104 ORTHO05D006285 7.6e-09 64.7 62 64.5
Hma1.2p1_3249F.1_g334440 Hydrangea macrophylla HOM05D001104 ORTHO05D006285 7.6e-09 64.7 62 64.5
Lsat_1_v5_gn_2_92021 Lactuca sativa HOM05D001104 ORTHO05D006285 7.6e-09 64.7 46 71.7
Manes.17G116900 Manihot esculenta HOM05D001104 ORTHO05D006285 7.6e-09 64.7 62 62.9
Hma1.2p1_0858F.1_g229390 Hydrangea macrophylla HOM05D001104 ORTHO05D006285 9.9e-09 64.3 64 60.9
MD09G1032500 Malus domestica HOM05D001104 ORTHO05D006285 9.9e-09 64.3 93 48.4
PGR142G3635 Punica granatum HOM05D001104 ORTHO05D006285 9.9e-09 64.3 61 60.7
TWI56G1008 Tripterygium wilfordii HOM05D001104 ORTHO05D006285 9.9e-09 64.3 46 71.7
Glyma.05G007200 Glycine max HOM05D001104 ORTHO05D006285 1.3e-08 63.9 46 69.6
AUR62043056 Chenopodium quinoa HOM05D001104 ORTHO05D006285 1.7e-08 63.5 63 60.3
Sopen02g031600 Solanum pennellii HOM05D001104 ORTHO05D006285 1.7e-08 63.5 57 64.9
PGSC0003DMG400000494 Solanum tuberosum HOM05D001104 ORTHO05D006285 1.7e-08 63.5 46 71.7
CiPaw.04G025200 Carya illinoinensis HOM05D001104 ORTHO05D006285 2.2e-08 63.2 44 70.5
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.2e-08 63.2 46 71.7
arahy.Tifrunner.gnm1.ann1.M213TK Arachis hypogaea HOM05D001104 ORTHO05D006285 2.9e-08 62.8 46 71.7
arahy.Tifrunner.gnm1.ann1.QHR6Q8 Arachis hypogaea HOM05D001104 ORTHO05D006285 2.9e-08 62.8 46 71.7
HanXRQChr07g0198751 Helianthus annuus HOM05D001104 ORTHO05D006285 2.9e-08 62.8 46 69.6
Nitab4.5_0003337g0020 Nicotiana tabacum HOM05D001104 ORTHO05D006285 2.9e-08 62.8 46 69.6
Peaxi162Scf00129g01121 Petunia axillaris HOM05D001104 ORTHO05D006285 2.9e-08 62.8 46 73.9
MSTRG.24019 Avicennia marina HOM05D001104 ORTHO05D006285 3.8e-08 62.4 46 69.6
Psat1g057120 Pisum sativum HOM05D001104 ORTHO05D006285 3.8e-08 62.4 46 69.6
TAR371G0404 Trochodendron aralioides HOM05D001104 ORTHO05D006285 3.8e-08 62.4 62 59.7
Nitab4.5_0006665g0010 Nicotiana tabacum HOM05D001104 ORTHO05D006285 4.9e-08 62.0 46 71.7
Sc16g0003610 Simmondsia chinensis HOM05D001104 ORTHO05D006285 4.9e-08 62.0 46 69.6
Prupe.3G285500 Prunus persica HOM05D001104 ORTHO05D006285 6.4e-08 61.6 62 58.1
Solyc02g086830.3 Solanum lycopersicum HOM05D001104 ORTHO05D006285 6.4e-08 61.6 61 57.4
TPR.G2270 Trifolium pratense HOM05D001104 ORTHO05D006285 6.4e-08 61.6 46 67.4
Cc07_g02170 Coffea canephora HOM05D001104 ORTHO05D006285 8.4e-08 61.2 58 67.2
Glyma.19G007800 Glycine max HOM05D001104 ORTHO05D006285 8.4e-08 61.2 46 67.4
Medtr6g007030 Medicago truncatula HOM05D001104 ORTHO05D006285 8.4e-08 61.2 46 67.4
Rhsim10G0021400 Rhododendron simsii HOM05D001104 ORTHO05D006285 8.4e-08 61.2 61 60.7
RcHm_v2.0_Chr2g0171711 Rosa chinensis HOM05D001104 ORTHO05D006285 8.4e-08 61.2 46 69.6
AT3G27925 Arabidopsis thaliana HOM05D001104 ORTHO05D006285 1.1e-07 60.8 36 83.3
ClCG09G018980 Citrullus lanatus HOM05D001104 ORTHO05D006285 1.1e-07 60.8 68 55.9
Eucgr.I01792 Eucalyptus grandis HOM05D001104 ORTHO05D006285 1.1e-07 60.8 70 57.1
MBI02_g33229_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006285 1.1e-07 60.8 46 69.6
Phvul.004G013600 Phaseolus vulgaris HOM05D001104 ORTHO05D006285 1.1e-07 60.8 46 65.2
Sp2g16970 Schrenkiella parvula HOM05D001104 ORTHO05D006285 1.1e-07 60.8 36 83.3
VMungo0464G1062 Vigna mungo HOM05D001104 ORTHO05D006285 1.1e-07 60.8 46 65.2
Thhalv10004246m.g Eutrema salsugineum HOM05D001104 ORTHO05D006285 1.4e-07 60.5 71 56.3
MELO3C021547.2 Cucumis melo HOM05D001104 ORTHO05D006285 1.9e-07 60.1 62 59.7
CsaV3_5G027370 Cucumis sativus L. HOM05D001104 ORTHO05D006285 1.9e-07 60.1 62 59.7
PSO017G2653 Papaver somniferum HOM05D001104 ORTHO05D006285 1.9e-07 60.1 63 60.3
PSO478G5059 Papaver somniferum HOM05D001104 ORTHO05D006285 1.9e-07 60.1 63 60.3
unitig_88.g27778 Utricularia gibba HOM05D001104 ORTHO05D006285 1.9e-07 60.1 76 50.0
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.4e-07 59.7 35 82.9
BcaC06g33771 Brassica carinata HOM05D001104 ORTHO05D006285 2.4e-07 59.7 36 80.6
A06p40790 Brassica napus HOM05D001104 ORTHO05D006285 2.4e-07 59.7 36 80.6
C07p37120 Brassica napus HOM05D001104 ORTHO05D006285 2.4e-07 59.7 36 80.6
BolC7t44223H Brassica oleracea HOM05D001104 ORTHO05D006285 2.4e-07 59.7 36 80.6
BraA06t26999Z Brassica rapa HOM05D001104 ORTHO05D006285 2.4e-07 59.7 36 80.6
Lj2g0005159 Lotus japonicus HOM05D001104 ORTHO05D006285 2.4e-07 59.7 65 56.9
Carub.0005s0649 Capsella rubella HOM05D001104 ORTHO05D006285 3.2e-07 59.3 61 60.7
vmacro05832 Vaccinium macrocarpon HOM05D001104 ORTHO05D006285 3.2e-07 59.3 86 50.0
AL5G17420 Arabidopsis lyrata HOM05D001104 ORTHO05D006285 4.2e-07 58.9 52 63.5
MBI05_g22327_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006285 4.2e-07 58.9 61 59.0
unitig_32.g10673 Utricularia gibba HOM05D001104 ORTHO05D006285 4.2e-07 58.9 63 55.6
Aqoxy3G02957 Aquilegia oxysepala HOM05D001104 ORTHO05D006285 5.4e-07 58.5 39 74.4
BcaC06g30951 Brassica carinata HOM05D001104 ORTHO05D006285 5.4e-07 58.5 76 52.6
Lalb_Chr21g0319471 Lupinus albus HOM05D001104 ORTHO05D006285 5.4e-07 58.5 46 65.2
THA.LOC104805392 Tarenaya hassleriana HOM05D001104 ORTHO05D006285 5.4e-07 58.5 59 59.3
CARHR149490 Cardamine hirsuta HOM05D001104 ORTHO05D006285 7.1e-07 58.2 60 61.7
Migut.K01371 Erythranthe guttata HOM05D001104 ORTHO05D006285 7.1e-07 58.2 63 60.3
Ah.06g187130 Amaranthus hybridus HOM05D001104 ORTHO05D006285 9.3e-07 57.8 58 60.3
FAN09G1077 Fragaria x ananassa HOM05D001104 ORTHO05D006285 9.3e-07 57.8 62 56.5
CDE06G2339 Ceratophyllum demersum HOM05D001104 ORTHO05D006285 1.2e-06 57.4 60 55.0
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.2e-06 57.4 51 62.7
Lsat_1_v5_gn_4_182500 Lactuca sativa HOM05D001104 ORTHO05D006285 1.2e-06 57.4 64 53.1
Potri.001G348800 Populus trichocarpa HOM05D001104 ORTHO05D006285 1.2e-06 57.4 49 67.3
SEGI_03269 Sequoiadendron giganteum HOM05D001104 ORTHO05D006285 1.2e-06 57.4 44 65.9
ATR0730G028 Amborella trichopoda HOM05D001104 ORTHO05D006285 1.6e-06 57.0 53 60.4
HanXRQChr09g0266161 Helianthus annuus HOM05D001104 ORTHO05D006285 1.6e-06 57.0 53 62.3
ECA232G3461 Erigeron canadensis HOM05D001104 ORTHO05D006285 2.1e-06 56.6 71 49.3
FvH4_6g50761 Fragaria vesca HOM05D001104 ORTHO05D006285 2.1e-06 56.6 60 56.7
FAN14G4111 Fragaria x ananassa HOM05D001104 ORTHO05D006285 2.1e-06 56.6 60 56.7
CDE07G1887 Ceratophyllum demersum HOM05D000928 ORTHO05D006285 4.6e-06 55.5 46 60.9
Sabra16G0228300 Salix brachista HOM05D001104 ORTHO05D006285 7.8e-06 54.7 73 50.7


User provided reference genes

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