Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.2e-132 476.5 241 100.0
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 3.4e-74 282.3 192 70.3
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 7.6e-58 228.0 178 61.2
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 4.6e-55 218.8 195 58.5
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 5.1e-54 215.3 179 62.6
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 6.7e-54 214.9 195 57.9
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.9e-53 213.4 179 57.0
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 4.3e-53 212.2 178 59.6
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 7.4e-53 211.5 180 58.3
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 9.6e-53 211.1 195 55.9
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.3e-52 210.7 179 59.2
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 3.7e-52 209.1 179 59.2
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 3.7e-52 209.1 197 54.3
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 3.7e-52 209.1 177 58.8
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 1.1e-51 207.6 181 57.5
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.4e-51 207.2 176 58.5
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 2.4e-51 206.5 195 56.4
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 2.4e-51 206.5 178 57.9
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 3.1e-51 206.1 178 57.9
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 4.0e-51 205.7 191 52.9
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 6.9e-51 204.9 185 57.8
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 6.9e-51 204.9 176 57.4
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 1.5e-50 203.8 180 56.1
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.5e-50 203.8 180 56.1
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 1.5e-50 203.8 178 57.9
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.5e-50 203.8 166 59.0
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.0e-50 203.4 180 56.1
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 2.0e-50 203.4 180 55.6
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.4e-50 202.6 183 56.3
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 3.4e-50 202.6 178 56.2
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 3.4e-50 202.6 178 56.7
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 3.4e-50 202.6 176 60.8
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 7.6e-50 201.4 180 52.8
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 1.0e-49 201.1 179 57.0
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 1.0e-49 201.1 181 56.4
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.3e-49 200.7 174 59.2
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 1.7e-49 200.3 178 54.5
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 1.7e-49 200.3 218 50.9
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 1.7e-49 200.3 178 56.7
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.9e-49 199.5 206 52.4
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 3.8e-49 199.1 178 55.6
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 4.9e-49 198.7 182 57.1
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.4e-48 197.2 189 55.6
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 1.4e-48 197.2 182 57.7
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 1.9e-48 196.8 215 50.7
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 1.9e-48 196.8 178 57.9
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 2.5e-48 196.4 195 52.8
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 3.2e-48 196.1 185 53.5
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 3.2e-48 196.1 195 50.3
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 3.2e-48 196.1 178 55.1
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 3.2e-48 196.1 196 53.6
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 4.2e-48 195.7 186 53.8
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 4.2e-48 195.7 178 55.1
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 5.5e-48 195.3 186 53.8
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 5.5e-48 195.3 178 55.1
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 5.5e-48 195.3 179 55.3
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 4.6e-47 192.2 196 52.0
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 1.0e-46 191.0 228 47.4
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.8e-46 190.3 177 54.8
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 1.8e-46 190.3 179 55.3
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 2.3e-46 189.9 177 54.8
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 3.9e-46 189.1 180 52.8
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.9e-46 189.1 154 59.7
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 6.7e-46 188.3 177 54.2
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 8.7e-46 188.0 167 56.9
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 8.7e-46 188.0 179 53.1
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 3.3e-45 186.0 197 52.3
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 4.3e-45 185.7 195 50.3
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 1.3e-44 184.1 144 59.0
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.8e-44 183.0 163 55.2
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 1.1e-43 181.0 180 53.3
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 9.0e-43 177.9 210 45.2
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 9.0e-43 177.9 155 56.8
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 1.2e-39 167.5 146 55.5
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 8.7e-38 161.4 187 47.6
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 1.2e-34 151.0 189 43.9
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 1.7e-33 147.1 180 43.9
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 2.2e-33 146.7 163 47.9
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 1.0e-30 137.9 177 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 9.7e-29 131.3 110 55.5
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 2.0e-26 123.6 164 46.3
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 5.0e-25 119.0 100 60.0
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 1.9e-24 117.1 179 39.7
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 1.6e-23 114.0 181 40.3
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 5.2e-22 109.0 148 40.5
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 1.5e-21 107.5 194 38.1
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 2.0e-21 107.1 114 50.0
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 6.3e-20 102.1 112 50.9
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.4e-19 100.1 66 65.2
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 3.0e-14 83.2 82 50.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.4e-11 74.3 119 40.3
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 5.5e-08 62.4 196 28.6
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 9.4e-08 61.6 150 30.7
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 2.1e-07 60.5 157 28.7
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 4.7e-07 59.3 117 36.8
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.0e-06 58.2 134 28.4
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.3e-06 57.0 146 29.5
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 3.0e-06 56.6 134 29.1
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 4.0e-06 56.2 104 35.6
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 4.0e-06 56.2 157 29.3
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 4.0e-06 56.2 131 28.2
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 5.2e-06 55.8 172 27.3
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 5.2e-06 55.8 104 35.6
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 5.2e-06 55.8 175 27.4
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 5.2e-06 55.8 134 26.9
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.2e-06 55.8 175 26.3
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 8.8e-06 55.1 110 31.8


User provided reference genes

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