Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 9.1e-110 400.2 196 100.0
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.1e-106 389.0 196 95.9
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 6.7e-105 384.0 196 94.4
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 7.0e-102 374.0 192 93.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 9.1e-102 373.6 196 91.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.0e-101 372.5 196 91.3
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.0e-101 372.5 193 92.2
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 2.0e-101 372.5 192 92.2
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.5e-101 371.7 196 89.8
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 4.5e-101 371.3 196 90.8
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 5.9e-101 370.9 193 92.7
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 5.9e-101 370.9 196 90.3
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 7.7e-101 370.5 196 90.3
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 7.7e-101 370.5 196 90.3
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 7.7e-101 370.5 196 90.3
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 7.7e-101 370.5 196 90.3
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 7.7e-101 370.5 196 90.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 1.0e-100 370.2 193 92.2
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.7e-100 369.4 196 91.3
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.7e-100 369.4 196 90.8
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 2.9e-100 368.6 196 90.3
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.9e-100 368.6 196 90.8
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 2.9e-100 368.6 196 89.8
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.9e-100 368.6 196 89.8
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 2.9e-100 368.6 196 90.3
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 89.8
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 89.8
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 89.8
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 89.8
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 89.8
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 3.8e-100 368.2 196 91.3
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 5.0e-100 367.9 196 89.8
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 5.0e-100 367.9 192 91.1
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 5.0e-100 367.9 192 91.1
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 6.5e-100 367.5 196 89.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.5e-100 367.5 196 90.3
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 6.5e-100 367.5 196 89.8
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 8.5e-100 367.1 192 90.1
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 8.5e-100 367.1 196 90.8
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 8.5e-100 367.1 192 92.2
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.1e-99 366.7 196 89.3
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.1e-99 366.7 196 89.8
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 1.1e-99 366.7 196 89.8
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.1e-99 366.7 196 91.3
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.5e-99 366.3 196 89.3
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-99 366.3 196 87.8
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-99 366.3 196 87.8
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.5e-99 366.3 196 88.8
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.5e-99 366.3 195 90.8
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.5e-99 366.3 216 83.8
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.9e-99 365.9 196 88.8
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.9e-99 365.9 196 89.8
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 2.5e-99 365.5 196 88.3
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 2.5e-99 365.5 192 91.7
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 2.5e-99 365.5 195 90.8
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.5e-99 365.5 196 89.3
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 2.5e-99 365.5 196 89.8
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 3.2e-99 365.2 196 89.3
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 3.2e-99 365.2 196 90.8
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 4.2e-99 364.8 196 90.8
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 4.2e-99 364.8 196 88.8
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 5.5e-99 364.4 196 87.8
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 5.5e-99 364.4 196 89.8
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 5.5e-99 364.4 192 91.1
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.5e-99 364.4 196 88.3
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 7.2e-99 364.0 196 88.3
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 7.2e-99 364.0 197 90.4
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 7.2e-99 364.0 196 89.3
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 9.4e-99 363.6 196 87.2
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 9.4e-99 363.6 196 88.3
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 9.4e-99 363.6 196 89.3
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.2e-98 363.2 192 90.1
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 1.2e-98 363.2 196 88.3
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.2e-98 363.2 196 89.3
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.6e-98 362.8 196 88.8
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 2.1e-98 362.5 196 87.2
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 2.1e-98 362.5 193 90.7
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 2.7e-98 362.1 192 89.6
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.7e-98 362.1 196 89.8
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 3.6e-98 361.7 196 87.8
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 3.6e-98 361.7 192 88.5
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.1e-98 360.9 197 89.3
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 6.1e-98 360.9 196 87.8
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 6.1e-98 360.9 224 80.4
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 8.0e-98 360.5 196 88.3
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.0e-97 360.1 195 89.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.0e-97 360.1 193 89.6
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.0e-97 360.1 193 88.6
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 1.4e-97 359.8 196 89.3
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 2.3e-97 359.0 196 88.3
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.3e-97 359.0 196 88.3
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.3e-97 359.0 196 88.3
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.3e-97 359.0 196 88.3
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.3e-97 359.0 196 88.3
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.3e-97 359.0 197 87.8
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.0e-97 358.6 196 87.8
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 3.0e-97 358.6 194 88.1
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 4.0e-97 358.2 196 87.8
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 6.8e-97 357.5 194 87.6
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 6.8e-97 357.5 196 87.8
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 6.8e-97 357.5 196 87.8
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 8.8e-97 357.1 209 83.7
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 1.5e-96 356.3 196 87.2
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.5e-96 356.3 194 88.7
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.5e-96 356.3 196 88.3
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 2.6e-96 355.5 192 87.0
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.6e-96 355.5 193 88.1
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 4.4e-96 354.8 196 87.2
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 5.7e-96 354.4 196 86.7
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.7e-96 354.4 192 89.6
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 9.8e-96 353.6 192 87.0
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 9.8e-96 353.6 192 87.0
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.3e-95 353.2 186 90.3
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-95 352.8 192 88.5
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-95 352.8 192 88.5
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 3.7e-95 351.7 188 88.8
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 4.8e-95 351.3 185 89.2
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 4.1e-94 348.2 196 84.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 5.4e-94 347.8 197 85.3
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 7.0e-94 347.4 188 88.3
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 9.1e-94 347.1 192 85.9
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.6e-93 346.3 193 84.5
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.0e-93 345.9 193 84.5
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.0e-93 345.9 188 88.3
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-92 343.2 196 84.7
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-92 343.2 196 84.7
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 3.8e-92 341.7 195 82.1
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.5e-91 339.7 197 85.8
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 9.5e-91 337.0 185 85.9
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 6.1e-90 334.3 185 84.3
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.4e-89 333.2 196 80.6
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 5.2e-89 331.3 196 84.7
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 1.2e-88 330.1 190 82.6
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 1.5e-88 329.7 197 79.7
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 4.4e-88 328.2 190 81.1
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 7.5e-88 327.4 187 82.9
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 4.9e-87 324.7 184 82.6
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 4.9e-87 324.7 190 80.0
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 4.9e-87 324.7 184 79.9
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 6.3e-87 324.3 190 80.0
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 8.3e-87 323.9 187 81.8
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.1e-86 323.6 187 81.3
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.0e-86 320.9 192 78.6
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 2.7e-85 318.9 187 79.7
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 3.5e-85 318.5 187 79.1
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 9.5e-83 310.5 197 81.2
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 9.5e-83 310.5 184 77.7
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.6e-82 309.7 196 73.0
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.4e-81 306.6 185 80.5
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 4.0e-81 305.1 184 77.2
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 5.2e-81 304.7 184 77.2
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 8.9e-81 303.9 184 77.2
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 5.4e-78 294.7 182 74.7
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 3.0e-76 288.9 184 72.8
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 5.2e-73 278.1 180 69.4
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.0e-72 276.2 184 68.5
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 7.5e-72 274.2 193 71.0
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.5e-67 260.0 196 71.4
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.6e-58 228.8 123 85.4
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.4e-46 190.3 91 95.6
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 7.6e-32 141.4 71 93.0
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 9.9e-32 141.0 179 43.0
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.0e-23 114.4 70 77.1
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 3.8e-23 112.5 57 89.5
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 7.4e-19 98.2 59 83.1
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 5.3e-17 92.0 50 88.0
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 1.7e-15 87.0 51 84.3
TAR636G2683 Trochodendron aralioides HOM05D003618 ORTHO05D415275 8.5e-07 58.2 59 52.5
TAR636G0941 Trochodendron aralioides HOM05D002305 ORTHO05D415090 5.5e-06 55.5 32 84.4


User provided reference genes

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