Gene: AT5G62790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G62790
  • Transcript Identifier AT5G62790.1
  • Gene Type Coding gene
  • Location Chr5 : 25214358-25217292 : negative

Gene Family Information

  • ID HOM05D003618
  • #Genes/#Species 190/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G62790.1
  • symbol DXR
  • Alias PDE129,PIGMENT-DEFECTIVE EMBRYO 129
  • uniprot Q9XFS9

Descriptions

  • Description 1-deoxy-D-xylulose 5-phosphate reductoisomerase
  • Computational description 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; INVOLVED IN: response to cadmium ion, response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal (InterPro:IPR013512), 1-deoxy-D-xylulose 5-phosphate reductoisomerase (InterPro:IPR003821), 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal (InterPro:IPR013644); Has 6813 Blast hits to 6813 proteins in 2049 species: Archae - 0; Bacteria - 4206; Metazoa - 6; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2492 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008299
IEA
GOA Databaseisoprenoid biosynthetic process
GO:0008299
TAS
Gene Ontologyisoprenoid biosynthetic process1
GO:0008299
IEA
InterProisoprenoid biosynthetic process
GO:0051484
IBA
Gene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process2
GO:0019288
IDA
TAS, IEA
Gene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3 4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030604
IEA
GOA Database1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0030604
IDA
IBA
Gene Ontology1-deoxy-D-xylulose-5-phosphate reductoisomerase activity2 3
GO:0030604
IEA
InterPro1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0005515
IEA
InterProprotein binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0070402
IBA
IEA
Gene OntologyNADPH binding2
GO:0070402
IEA
InterProNADPH binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0030145
IBA
Gene Ontologymanganese ion binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 5
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036291 NAD(P)-binding domain superfamily
IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal
IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase
IPR036169 DXP reductoisomerase, C-terminal domain superfamily
IPR026877 DXP reductoisomerase C-terminal domain
IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
Mapman id Description
9.1.2.3 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate reductase (DXR)