Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 2.4e-284 981.5 485 100.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 6.7e-271 936.8 485 96.1
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.3e-262 907.9 461 93.5
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.8e-242 841.3 457 85.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.7e-240 835.1 460 85.4
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.0e-239 833.2 460 84.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.5e-238 829.3 460 83.7
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.0e-238 828.9 460 83.5
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.0e-238 828.9 460 84.8
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 2.6e-238 828.6 460 84.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.3e-238 828.2 461 83.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 7.5e-238 827.0 456 84.4
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.3e-237 826.2 456 83.8
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.8e-237 825.1 460 83.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.7e-237 824.7 460 83.9
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.1e-236 823.2 462 83.3
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.4e-236 822.8 460 83.7
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.4e-236 822.8 461 84.6
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.8e-236 822.4 462 83.3
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 7.0e-236 820.5 456 84.0
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 9.1e-236 820.1 456 83.6
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.0e-235 818.9 456 83.8
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 5.9e-235 817.4 456 84.2
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.7e-234 815.8 461 83.3
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.7e-234 815.8 461 82.4
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.2e-234 815.5 461 83.3
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.2e-234 815.5 460 83.3
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.2e-234 815.5 460 83.0
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.9e-234 815.1 460 82.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 3.8e-234 814.7 460 83.3
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 3.8e-234 814.7 460 83.3
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.0e-234 814.3 464 82.3
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 6.5e-234 813.9 461 82.2
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.5e-234 813.9 461 82.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.5e-233 812.8 456 82.0
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.5e-233 812.0 455 83.3
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.5e-233 812.0 456 83.3
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-233 812.0 464 82.8
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.2e-233 811.6 448 84.2
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 7.2e-233 810.4 461 82.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.2e-232 809.7 461 82.6
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.2e-232 809.7 461 82.9
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.1e-232 808.9 461 82.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 2.1e-232 808.9 456 82.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.7e-232 808.5 456 82.0
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 4.7e-232 807.7 460 81.7
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 6.1e-232 807.4 456 83.8
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.0e-231 806.6 460 80.7
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.4e-231 806.2 460 80.9
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.8e-231 805.8 477 80.5
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 2.3e-231 805.4 457 82.1
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.0e-231 805.1 461 81.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.0e-231 805.1 439 84.7
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 6.8e-231 803.9 456 81.1
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 6.8e-231 803.9 460 81.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.5e-230 802.7 461 82.0
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 3.4e-230 801.6 461 81.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 5.7e-230 800.8 461 80.9
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 7.5e-230 800.4 456 82.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 7.5e-230 800.4 461 80.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 7.5e-230 800.4 460 81.3
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.7e-229 799.3 461 81.6
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.7e-229 799.3 461 81.3
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.8e-229 798.5 466 79.4
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 4.8e-229 797.7 439 83.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 6.3e-229 797.3 459 80.4
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.8e-228 795.8 461 80.3
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.1e-228 794.7 460 80.0
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 5.4e-228 794.3 461 80.7
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 7.0e-228 793.9 461 80.9
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 9.1e-228 793.5 461 80.9
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.6e-227 792.7 461 80.9
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.6e-227 792.7 459 80.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 2.7e-227 792.0 456 80.5
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.0e-226 790.0 461 79.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.7e-226 789.3 471 79.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.7e-226 789.3 457 80.7
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.2e-226 788.9 456 81.4
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.2e-226 788.9 461 79.8
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.9e-226 788.5 460 78.7
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.9e-226 788.5 460 78.7
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 6.5e-226 787.3 476 79.0
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 6.5e-226 787.3 456 81.4
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 6.5e-226 787.3 457 81.0
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.5e-225 786.2 488 75.0
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.5e-225 786.2 460 79.6
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.9e-225 785.8 460 78.3
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.2e-225 784.6 460 78.3
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 4.2e-225 784.6 456 79.2
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 7.2e-225 783.9 456 79.2
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.2e-224 783.1 460 78.0
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 2.1e-224 782.3 456 78.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 4.7e-224 781.2 456 81.6
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 6.1e-224 780.8 456 78.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.0e-223 780.0 456 78.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.0e-222 775.8 468 76.7
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.7e-222 774.2 473 78.4
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.3e-221 773.1 456 78.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.7e-218 762.7 460 77.8
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.0e-215 753.4 486 74.7
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.6e-211 738.0 481 74.4
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.0e-210 734.6 456 77.4
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 9.5e-209 730.3 440 77.7
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-208 729.9 440 77.7
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.8e-207 726.1 458 72.5
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 4.0e-207 724.9 452 73.7
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 5.0e-202 708.0 431 75.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.8e-199 699.5 459 69.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 2.0e-198 696.0 489 71.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.6e-195 686.4 456 72.6
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.1e-193 680.2 480 69.8
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 4.3e-185 651.7 361 82.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 6.9e-183 644.4 462 68.6
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 3.0e-178 629.0 463 67.2
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.3e-175 618.2 352 79.8
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.4e-172 608.2 352 79.0
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 5.1e-170 601.7 304 94.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 8.1e-168 594.3 456 64.7
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.8e-162 576.6 304 91.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.6e-158 562.8 459 62.7
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.9e-145 520.0 408 64.7
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 9.7e-145 517.7 403 63.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.9e-143 511.5 308 82.1
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.4e-138 497.3 441 55.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 2.8e-136 489.6 281 81.9
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 3.1e-135 486.1 275 82.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 3.1e-119 433.0 289 71.6
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.5e-109 398.7 233 77.3
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 5.9e-102 375.6 228 77.2
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 5.9e-102 375.6 228 77.2
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 7.3e-100 368.6 211 82.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.8e-91 340.1 397 46.3
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 2.9e-88 330.1 200 79.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 4.3e-84 316.2 445 42.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 8.9e-74 282.0 409 42.3
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 2.9e-72 276.9 152 79.6
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 7.6e-65 252.3 161 72.7
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 4.9e-64 249.6 161 72.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.5e-60 238.0 154 70.1
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.9e-60 237.7 160 67.5
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 2.5e-47 194.1 99 85.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 2.5e-47 194.1 99 85.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-42 177.9 111 73.9
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 7.1e-39 166.0 105 72.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 9.7e-36 155.6 97 73.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.2e-35 154.5 95 81.1
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 5.9e-33 146.4 81 80.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.0e-29 134.0 91 68.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 3.9e-29 133.7 77 79.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.5e-23 114.4 56 96.4
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.7e-22 110.9 66 75.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 6.7e-21 106.3 133 42.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.2e-19 101.3 74 74.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.2e-19 101.3 74 74.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.2e-14 85.5 45 82.2
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 6.7e-13 79.7 72 58.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.8e-11 74.3 57 59.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.1e-10 72.4 44 79.5
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.4e-10 71.2 34 85.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.8e-08 63.9 66 56.1
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 7.2e-07 59.7 34 76.5
MBI04_g12481_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D243036 4.7e-06 57.0 32 81.2


User provided reference genes

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