Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb311360 Zea mays HOM05D003498 ORTHO05D004191 1.4e-50 202.6 101 100.0
Zm00001eb248420 Zea mays HOM05D003498 ORTHO05D004191 2.5e-47 191.8 101 95.0
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 6.5e-43 177.2 91 95.6
Zm00001eb208950 Zea mays HOM05D003498 ORTHO05D004191 1.9e-42 175.6 91 94.5
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 2.7e-41 171.8 91 91.2
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 5.3e-37 157.5 91 79.1
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 2.2e-35 152.1 91 76.9
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 2.2e-35 152.1 91 76.9
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 2.2e-35 152.1 91 78.0
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 3.8e-35 151.4 91 78.0
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 6.5e-35 150.6 91 75.8
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 6.5e-35 150.6 91 79.1
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 6.5e-35 150.6 91 79.1
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 8.4e-35 150.2 91 78.0
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 1.1e-34 149.8 91 79.1
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 1.1e-34 149.8 91 76.9
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.4e-34 149.4 89 80.9
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 1.4e-34 149.4 92 76.1
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 1.9e-34 149.1 91 76.9
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 1.9e-34 149.1 91 76.9
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 1.9e-34 149.1 91 76.9
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 3.2e-34 148.3 89 79.8
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 3.2e-34 148.3 91 76.9
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 4.2e-34 147.9 91 75.8
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 5.5e-34 147.5 91 74.7
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 5.5e-34 147.5 92 75.0
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 5.5e-34 147.5 91 76.9
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 7.2e-34 147.1 91 76.9
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 7.2e-34 147.1 91 78.0
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 7.2e-34 147.1 91 78.0
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 9.3e-34 146.7 91 74.7
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 9.3e-34 146.7 91 76.9
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 1.2e-33 146.4 91 74.7
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 1.6e-33 146.0 91 74.7
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 1.6e-33 146.0 91 73.6
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 1.6e-33 146.0 89 77.5
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 1.6e-33 146.0 91 76.9
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 1.6e-33 146.0 91 76.9
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 1.6e-33 146.0 89 75.3
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.7e-33 145.2 91 74.7
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 2.7e-33 145.2 91 74.7
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 2.7e-33 145.2 91 73.6
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 3.5e-33 144.8 91 74.7
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 3.5e-33 144.8 91 72.5
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 3.5e-33 144.8 91 74.7
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 3.5e-33 144.8 91 74.7
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 4.6e-33 144.4 89 76.4
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 4.6e-33 144.4 88 77.3
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.6e-33 144.4 91 74.7
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 4.6e-33 144.4 91 74.7
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 4.6e-33 144.4 91 75.8
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 73.6
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 73.6
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 6.1e-33 144.1 88 76.1
Medtr0271s0030 Medicago truncatula HOM05D003498 ORTHO05D004191 6.1e-33 144.1 88 76.1
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 73.6
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 73.6
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 74.7
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 6.1e-33 144.1 91 74.7
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 7.9e-33 143.7 91 73.6
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 7.9e-33 143.7 91 74.7
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 73.6
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 72.5
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 72.5
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 73.6
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 72.5
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 71.4
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 72.5
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 1.0e-32 143.3 89 75.3
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 1.0e-32 143.3 89 73.0
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 71.4
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 1.0e-32 143.3 91 74.7
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 1.0e-32 143.3 89 75.3
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 1.3e-32 142.9 89 76.4
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 1.3e-32 142.9 89 73.0
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.3e-32 142.9 90 73.3
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.3e-32 142.9 90 73.3
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 1.3e-32 142.9 91 72.5
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 1.3e-32 142.9 91 73.6
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.8e-32 142.5 91 72.5
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 1.8e-32 142.5 91 72.5
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 1.8e-32 142.5 90 72.2
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 1.8e-32 142.5 99 68.7
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 2.3e-32 142.1 91 74.7
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 2.3e-32 142.1 90 72.2
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 2.3e-32 142.1 91 73.6
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 3.0e-32 141.7 91 72.5
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 3.0e-32 141.7 91 72.5
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 3.0e-32 141.7 91 71.4
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 3.0e-32 141.7 91 70.3
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 3.0e-32 141.7 91 70.3
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 3.9e-32 141.4 91 71.4
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 3.9e-32 141.4 89 75.3
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 6.7e-32 140.6 91 71.4
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 6.7e-32 140.6 90 72.2
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 8.7e-32 140.2 91 71.4
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 8.7e-32 140.2 91 72.5
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 8.7e-32 140.2 91 70.3
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 8.7e-32 140.2 89 74.2
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 8.7e-32 140.2 91 72.5
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 8.7e-32 140.2 87 73.6
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.1e-31 139.8 90 72.2
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 1.1e-31 139.8 91 72.5
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.1e-31 139.8 89 73.0
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 1.1e-31 139.8 91 71.4
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 1.5e-31 139.4 91 70.3
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 1.5e-31 139.4 89 73.0
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 1.5e-31 139.4 89 75.3
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.5e-31 139.4 89 75.3
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 1.5e-31 139.4 91 70.3
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 1.5e-31 139.4 91 71.4
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 1.9e-31 139.0 91 69.2
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 1.9e-31 139.0 91 70.3
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 1.9e-31 139.0 91 71.4
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 2.5e-31 138.7 91 70.3
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 2.5e-31 138.7 91 70.3
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 2.5e-31 138.7 89 75.3
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 2.5e-31 138.7 89 71.9
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 3.3e-31 138.3 91 69.2
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 4.3e-31 137.9 89 71.9
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 4.3e-31 137.9 91 70.3
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 7.4e-31 137.1 91 69.2
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.3e-30 136.3 91 67.0
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 1.6e-30 136.0 90 72.2
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 2.2e-30 135.6 102 67.6
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 2.8e-30 135.2 91 69.2
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 3.7e-30 134.8 91 65.9
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 4.8e-30 134.4 90 71.1
AUR62043688 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.1e-29 133.3 97 62.9
Mapoly0001s0438 Marchantia polymorpha HOM05D003498 ORTHO05D004191 6.9e-29 130.6 89 68.5
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 2.0e-28 129.0 103 61.2
MELO3C017855.2 Cucumis melo HOM05D003498 ORTHO05D004191 3.4e-28 128.3 90 67.8
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.9e-28 127.5 91 64.8
SMO201G0123 Selaginella moellendorffii HOM05D003498 ORTHO05D004191 7.7e-28 127.1 88 68.2
CsaV3_4G001780 Cucumis sativus L. HOM05D003498 ORTHO05D004191 1.7e-27 125.9 87 67.8
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 2.2e-27 125.6 87 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2546 Anthoceros agrestis HOM05D003498 ORTHO05D004191 2.5e-26 122.1 92 59.8
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 1.2e-25 119.8 91 65.9
CSS0025632 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.7e-25 118.6 91 63.7
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.4e-24 116.3 91 64.8
Gohir.A07G076000 Gossypium hirsutum HOM05D003498 ORTHO05D004191 5.1e-24 114.4 71 71.8
Gohir.D07G080500 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.1e-23 113.2 67 77.6
CBR_g30299 Chara braunii HOM05D003498 ORTHO05D004191 1.5e-23 112.8 87 60.9
CBR_g50851 Chara braunii HOM05D003498 ORTHO05D004191 4.3e-23 111.3 87 59.8
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 1.8e-21 105.9 91 59.3
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 2.4e-21 105.5 91 60.4
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 2.4e-21 105.5 68 69.1
MCO11G310 Micromonas commoda HOM05D003498 ORTHO05D004191 5.3e-21 104.4 92 56.5
PSO384G2342 Papaver somniferum HOM05D003498 ORTHO05D004191 6.9e-21 104.0 136 44.1
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 2.2e-19 99.0 91 58.2
Cre03.g190750 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 2.9e-19 98.6 85 57.6
CSS0002226 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.0e-19 97.8 60 75.0
Haze_27494 Corylus avellana HOM05D003498 ORTHO05D004191 5.0e-19 97.8 93 50.5
Lalb_Chr01g0016871 Lupinus albus HOM05D003498 ORTHO05D004191 1.1e-18 96.7 98 54.1
PRCOL_00002439 Prasinoderma coloniale HOM05D003498 ORTHO05D004191 1.1e-18 96.7 88 51.1
Haze_21315 Corylus avellana HOM05D003498 ORTHO05D004191 1.9e-18 95.9 58 77.6
AUR62042988 Chenopodium quinoa HOM05D003498 ORTHO05D004191 3.2e-18 95.1 60 70.0
AUR62003275 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.2e-18 94.7 83 56.6
CSS0030890 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 7.2e-18 94.0 91 54.9
AUR62033715 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.7e-17 91.3 60 66.7
Atru.chr6.2501 Acer truncatum HOM05D003498 ORTHO05D004191 6.1e-17 90.9 58 70.7
BcaC05g26822 Brassica carinata HOM05D003498 ORTHO05D004191 1.8e-16 89.4 55 76.4
Cre03.g190800 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 5.1e-16 87.8 85 52.9
Pp3c13_20320 Physcomitrium patens HOM05D003498 ORTHO05D004191 6.7e-16 87.4 58 67.2
SMO327G0007 Selaginella moellendorffii HOM05D003498 ORTHO05D379411 6.7e-16 87.4 59 67.8
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.3e-15 85.1 78 59.0
Haze_25285 Corylus avellana HOM05D003498 ORTHO05D004191 2.8e-14 82.0 78 55.1
Atru.chr9.861 Acer truncatum HOM05D003498 ORTHO05D037953 1.1e-13 80.1 55 65.5
Dinv27202 Davidia involucrata HOM05D003498 ORTHO05D004191 1.1e-13 80.1 53 66.0
AUR62040722 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.6e-12 75.5 54 59.3
Atru.chr9.862 Acer truncatum HOM05D003498 ORTHO05D004191 1.7e-11 72.8 83 53.0
Hma1.2p1_1219F.1_g267800 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 2.2e-11 72.4 48 62.5
Cfa023828 Carpinus fangiana HOM05D003498 ORTHO05D004191 8.5e-11 70.5 90 37.8
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.1e-10 70.1 48 72.9
HanXRQChr14g0428161 Helianthus annuus HOM05D003498 ORTHO05D004191 5.5e-10 67.8 38 84.2
Ciclev10026903m.g Citrus clementina HOM05D003498 ORTHO05D037953 1.6e-09 66.2 53 58.5
SMO203G0194 Selaginella moellendorffii HOM05D003498 ORTHO05D378116 8.0e-09 63.9 35 80.0
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 2.6e-07 58.9 59 47.5
C05p26950 Brassica napus HOM05D003498 ORTHO05D004191 2.2e-06 55.8 34 67.6
TPR.G5710 Trifolium pratense HOM05D003498 ORTHO05D004191 2.8e-06 55.5 33 75.8
QL02p008646 Quercus lobata HOM05D003498 ORTHO05D004191 6.3e-06 54.3 46 63.0


User provided reference genes

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