Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb305410 Zea mays HOM05D006654 ORTHO05D008201 8.1e-120 433.7 214 100.0
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 1.9e-100 369.4 192 94.8
HPP92_000346 Vanilla planifolia HOM05D006654 ORTHO05D008201 4.3e-97 358.2 192 90.6
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 8.2e-96 354.0 192 89.6
QL10p003811 Quercus lobata HOM05D006654 ORTHO05D008201 2.0e-94 349.4 191 89.0
Gohir.A03G052100 Gossypium hirsutum HOM05D006654 ORTHO05D008201 3.4e-94 348.6 203 85.2
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 5.9e-94 347.8 192 87.5
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 7.6e-94 347.4 192 88.0
Aqoxy5G03402 Aquilegia oxysepala HOM05D006654 ORTHO05D008201 1.0e-93 347.1 192 88.0
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 1.0e-93 347.1 192 88.0
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 1.0e-93 347.1 192 87.0
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 1.0e-93 347.1 192 87.5
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 1.0e-93 347.1 192 88.0
Rhsim12G0173900 Rhododendron simsii HOM05D006654 ORTHO05D008201 1.3e-93 346.7 192 88.5
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 1.7e-93 346.3 192 87.5
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 2.2e-93 345.9 192 87.0
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 2.2e-93 345.9 192 87.0
vmacro16672 Vaccinium macrocarpon HOM05D006654 ORTHO05D008201 2.2e-93 345.9 192 88.0
Nn4g22349 Nelumbo nucifera HOM05D006654 ORTHO05D008201 2.9e-93 345.5 192 87.0
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 3.8e-93 345.1 192 85.9
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 6.5e-93 344.4 192 86.5
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 1.1e-92 343.6 193 87.6
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 1.1e-92 343.6 192 87.0
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 1.9e-92 342.8 192 86.5
arahy.Tifrunner.gnm1.ann1.653AWM Arachis hypogaea HOM05D006654 ORTHO05D008201 1.9e-92 342.8 192 85.9
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 1.9e-92 342.8 192 85.9
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 1.9e-92 342.8 192 85.9
Cpa.g.sc13.133 Carica papaya HOM05D006654 ORTHO05D008201 2.5e-92 342.4 192 87.0
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 2.5e-92 342.4 192 85.9
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 2.5e-92 342.4 192 85.9
Hma1.2p1_0014F.1_g009570 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 2.5e-92 342.4 191 86.9
PSO063G4350 Papaver somniferum HOM05D006654 ORTHO05D008201 5.5e-92 341.3 192 87.0
PSO782G1240 Papaver somniferum HOM05D006654 ORTHO05D008201 5.5e-92 341.3 192 87.0
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 5.5e-92 341.3 192 85.9
Atru.BG.190.p Acer truncatum HOM05D006654 ORTHO05D008201 7.2e-92 340.9 191 85.9
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 9.3e-92 340.5 192 84.4
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 9.3e-92 340.5 192 85.9
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 9.3e-92 340.5 192 84.4
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 1.2e-91 340.1 192 87.0
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 1.6e-91 339.7 192 84.9
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 2.1e-91 339.3 192 83.9
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 2.1e-91 339.3 204 81.4
Aa31LG1G18600 Aethionema arabicum HOM05D006654 ORTHO05D008201 2.7e-91 339.0 192 83.3
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 2.7e-91 339.0 192 83.9
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 2.7e-91 339.0 192 85.9
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 2.7e-91 339.0 192 86.5
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 3.5e-91 338.6 192 83.3
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 3.5e-91 338.6 192 83.9
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 3.5e-91 338.6 192 85.9
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 3.5e-91 338.6 192 83.9
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 4.6e-91 338.2 192 83.9
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 6.1e-91 337.8 192 84.9
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 6.1e-91 337.8 192 84.9
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 6.1e-91 337.8 192 85.9
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 6.1e-91 337.8 192 85.4
Glyma.20G249100 Glycine max HOM05D006654 ORTHO05D008201 1.0e-90 337.0 192 84.4
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 1.0e-90 337.0 192 84.4
Potri.012G096500 Populus trichocarpa HOM05D006654 ORTHO05D008201 1.3e-90 336.7 192 86.5
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 2.3e-90 335.9 192 84.4
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 3.0e-90 335.5 192 82.3
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 3.0e-90 335.5 204 80.4
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 3.9e-90 335.1 192 84.9
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 3.9e-90 335.1 192 84.9
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 5.1e-90 334.7 192 83.3
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 6.7e-90 334.3 192 83.9
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 6.7e-90 334.3 192 83.9
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 6.7e-90 334.3 192 83.9
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 1.1e-89 333.6 192 83.9
ATR0561G261 Amborella trichopoda HOM05D006654 ORTHO05D008201 1.5e-89 333.2 204 80.4
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.5e-89 333.2 192 83.3
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 1.9e-89 332.8 192 83.3
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 1.9e-89 332.8 192 83.3
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 2.5e-89 332.4 192 83.3
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.3e-89 332.0 192 82.8
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 5.7e-89 331.3 204 80.4
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 5.7e-89 331.3 204 80.4
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 1.3e-88 330.1 192 84.4
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 1.6e-88 329.7 192 83.3
Lj5g0001059 Lotus japonicus HOM05D006654 ORTHO05D008201 2.8e-88 328.9 192 82.3
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 4.8e-88 328.2 192 82.8
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.4e-87 326.6 192 81.8
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 1.4e-87 326.6 204 77.9
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 1.4e-87 326.6 192 81.2
Ca_11428_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 2.4e-87 325.9 192 80.7
Dinv11162 Davidia involucrata HOM05D006654 ORTHO05D008201 9.0e-87 323.9 192 82.8
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.5e-86 323.2 204 77.9
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 7.7e-86 320.9 218 74.8
MELO3C002357.2 Cucumis melo HOM05D006654 ORTHO05D008201 8.5e-85 317.4 214 74.8
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 5.1e-82 308.1 192 80.2
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 1.3e-80 303.5 259 61.0
Nn3g16497 Nelumbo nucifera HOM05D006654 ORTHO05D008201 8.2e-72 274.2 158 85.4
Psat6g243960 Pisum sativum HOM05D006654 ORTHO05D008201 1.4e-71 273.5 160 80.0
CBR_g21852 Chara braunii HOM05D006654 ORTHO05D008201 6.5e-69 264.6 161 75.8
Ciclev10021838m.g Citrus clementina HOM05D006654 ORTHO05D008201 2.5e-68 262.7 149 87.2
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 5.5e-68 261.5 171 78.4
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 7.2e-68 261.2 157 81.5
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 1.2e-67 260.4 192 70.8
Lj9A478G90 Lonicera japonica HOM05D006654 ORTHO05D008201 6.1e-67 258.1 163 80.4
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 2.3e-66 256.1 148 85.1
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 5.2e-66 255.0 161 78.3
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 5.2e-66 255.0 161 78.3
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 6.7e-66 254.6 161 77.6
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 6.7e-66 254.6 161 77.6
Sabra15G0115700 Salix brachista HOM05D006654 ORTHO05D008201 2.0e-65 253.1 153 83.7
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 4.4e-65 251.9 148 85.1
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 4.4e-65 251.9 148 83.8
Ca_29862_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 4.5e-62 241.9 148 78.4
AagrBONN_evm.TU.Sc2ySwM_228.2755 Anthoceros agrestis HOM05D006654 ORTHO05D008201 1.4e-55 220.3 127 78.7
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 3.8e-45 185.7 105 86.7
Hund10171 Selenicereus undatus HOM05D006654 ORTHO05D008201 3.8e-45 185.7 149 65.8
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 2.1e-43 179.9 105 83.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.6e-38 162.2 110 73.6
MCO06G092 Micromonas commoda HOM05D006654 ORTHO05D008201 1.2e-35 154.1 198 47.0
C09p09330 Brassica napus HOM05D006654 ORTHO05D008201 1.4e-34 150.6 90 82.2
BolC9t53845H Brassica oleracea HOM05D006654 ORTHO05D008201 1.4e-34 150.6 90 82.2
LjContig00075g0008356 Lotus japonicus HOM05D006654 ORTHO05D008201 2.0e-33 146.7 137 61.3
BcaC04g23328 Brassica carinata HOM05D006654 ORTHO05D008201 5.8e-33 145.2 83 85.5
Cre12.g485750 Chlamydomonas reinhardtii HOM05D006654 ORTHO05D008201 4.7e-27 125.6 195 36.4
SHI10786 Sapria himalayana HOM05D006654 ORTHO05D008201 1.1e-26 124.4 89 65.2
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 6.8e-26 121.7 68 91.2
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 6.8e-26 121.7 68 91.2
PRCOL_00005389 Prasinoderma coloniale HOM05D006654 ORTHO05D008201 5.4e-23 112.1 211 33.6
BcaB04g19916 Brassica carinata HOM05D006654 ORTHO05D008201 5.6e-20 102.1 60 85.0
RcHm_v2.0_Chr7g0215371 Rosa chinensis HOM05D006654 ORTHO05D008201 1.6e-14 84.0 101 46.5
Prupe.2G008500 Prunus persica HOM05D006654 ORTHO05D008201 6.0e-14 82.0 47 91.5
Pp3c19_20620 Physcomitrium patens HOM05D006654 ORTHO05D008201 6.6e-13 78.6 113 46.0
Mapoly0009s0244 Marchantia polymorpha HOM05D049801 ORTHO05D043924 2.0e-09 67.0 99 41.4
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 2.7e-06 56.6 38 65.8


User provided reference genes

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