Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb302030 Zea mays HOM05D000921 ORTHO05D002852 2.3e-73 278.9 146 100.0
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 1.6e-34 149.8 121 73.6
Zm00001eb371860 Zea mays HOM05D000921 ORTHO05D002852 1.8e-33 146.4 114 74.6
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.2e-29 133.7 121 65.3
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 6.5e-20 101.3 124 53.2
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 4.2e-19 98.6 123 50.4
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 1.6e-18 96.7 119 51.3
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 2.1e-18 96.3 132 51.5
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 2.7e-18 95.9 125 52.0
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 2.7e-18 95.9 111 57.7
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 4.7e-18 95.1 115 53.0
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 8.0e-18 94.4 121 51.2
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 8.0e-18 94.4 116 53.4
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 1.0e-17 94.0 125 51.2
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 1.0e-17 94.0 121 51.2
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 1.4e-17 93.6 117 51.3
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 2.3e-17 92.8 112 54.5
TAR629G2419 Trochodendron aralioides HOM05D000921 ORTHO05D002852 2.3e-17 92.8 125 51.2
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 3.0e-17 92.4 119 49.6
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 3.9e-17 92.0 118 50.8
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 5.2e-17 91.7 116 50.9
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 6.7e-17 91.3 115 50.4
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 6.7e-17 91.3 120 50.8
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 1.1e-16 90.5 118 49.2
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 1.5e-16 90.1 119 49.6
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.5e-16 90.1 118 50.8
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 1.5e-16 90.1 109 54.1
Ciclev10018468m.g Citrus clementina HOM05D000921 ORTHO05D002852 3.3e-16 89.0 117 49.6
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 4.4e-16 88.6 94 57.4
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.4e-16 88.6 118 50.0
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 4.4e-16 88.6 119 49.6
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 4.4e-16 88.6 109 54.1
Sp4g27560 Schrenkiella parvula HOM05D000921 ORTHO05D002852 4.4e-16 88.6 118 51.7
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 4.4e-16 88.6 122 50.8
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 5.7e-16 88.2 118 50.0
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 5.7e-16 88.2 122 48.4
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 5.7e-16 88.2 114 50.9
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 5.7e-16 88.2 108 50.9
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 7.4e-16 87.8 110 50.9
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 7.4e-16 87.8 119 47.1
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 7.4e-16 87.8 119 50.4
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 7.4e-16 87.8 120 52.5
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 7.4e-16 87.8 121 48.8
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 9.7e-16 87.4 109 54.1
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 9.7e-16 87.4 113 52.2
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 9.7e-16 87.4 114 50.9
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 9.7e-16 87.4 100 59.0
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 9.7e-16 87.4 81 64.2
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 1.3e-15 87.0 120 50.8
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 1.3e-15 87.0 120 50.8
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.3e-15 87.0 118 50.0
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 1.3e-15 87.0 118 48.3
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.7e-15 86.7 118 48.3
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 1.7e-15 86.7 118 48.3
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 1.7e-15 86.7 122 47.5
SEGI_07876 Sequoiadendron giganteum HOM05D000921 ORTHO05D002852 1.7e-15 86.7 121 48.8
AUR62013603 Chenopodium quinoa HOM05D000921 ORTHO05D002852 2.2e-15 86.3 119 50.4
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 2.2e-15 86.3 117 47.0
Lalb_Chr07g0189601 Lupinus albus HOM05D000921 ORTHO05D002852 2.2e-15 86.3 119 47.1
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 2.2e-15 86.3 68 75.0
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 2.8e-15 85.9 113 52.2
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 2.8e-15 85.9 117 46.2
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 3.7e-15 85.5 117 50.4
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 4.8e-15 85.1 120 50.0
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 4.8e-15 85.1 120 48.3
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 4.8e-15 85.1 117 48.7
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 4.8e-15 85.1 120 50.0
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 6.3e-15 84.7 120 50.0
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 8.2e-15 84.3 105 56.2
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 8.2e-15 84.3 119 49.6
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 8.2e-15 84.3 123 48.8
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 1.1e-14 84.0 120 47.5
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 1.1e-14 84.0 120 47.5
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.1e-14 84.0 129 46.5
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 1.1e-14 84.0 118 48.3
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 1.1e-14 84.0 61 75.4
Ah.05g175310 Amaranthus hybridus HOM05D000921 ORTHO05D002852 1.4e-14 83.6 115 49.6
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 1.4e-14 83.6 68 70.6
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 1.4e-14 83.6 104 54.8
VMungo1383G3171 Vigna mungo HOM05D000921 ORTHO05D002852 1.4e-14 83.6 109 52.3
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.8e-14 83.2 61 77.0
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 1.8e-14 83.2 112 52.7
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 2.4e-14 82.8 116 47.4
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 2.4e-14 82.8 61 75.4
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.4e-14 82.8 121 46.3
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.4e-14 82.8 123 44.7
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 2.4e-14 82.8 123 44.7
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 2.4e-14 82.8 61 72.1
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 3.1e-14 82.4 89 58.4
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 4.1e-14 82.0 61 77.0
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 4.1e-14 82.0 121 46.3
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 4.1e-14 82.0 121 46.3
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 4.1e-14 82.0 121 46.3
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 4.1e-14 82.0 64 73.4
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 4.1e-14 82.0 118 45.8
VMungo0331G0704 Vigna mungo HOM05D000921 ORTHO05D002852 4.1e-14 82.0 119 42.9
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 5.3e-14 81.6 110 50.9
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.3e-14 81.6 120 45.0
CARHR140720 Cardamine hirsuta HOM05D000921 ORTHO05D002852 7.0e-14 81.3 118 46.6
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 7.0e-14 81.3 113 49.6
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 7.0e-14 81.3 132 42.4
Peaxi162Scf00416g00310 Petunia axillaris HOM05D000921 ORTHO05D002852 7.0e-14 81.3 104 54.8
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 9.1e-14 80.9 101 53.5
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 9.1e-14 80.9 118 44.9
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 9.1e-14 80.9 107 50.5
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.2e-13 80.5 120 45.0
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 1.2e-13 80.5 56 78.6
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 1.6e-13 80.1 118 44.9
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 1.6e-13 80.1 117 47.9
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 2.0e-13 79.7 118 44.9
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 2.0e-13 79.7 118 44.9
Ca_23830_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 2.0e-13 79.7 120 43.3
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 2.0e-13 79.7 127 40.2
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 2.6e-13 79.3 120 44.2
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 3.5e-13 79.0 118 44.1
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 4.5e-13 78.6 56 75.0
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 5.9e-13 78.2 118 44.1
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 5.9e-13 78.2 121 46.3
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 5.9e-13 78.2 82 53.7
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 1.0e-12 77.4 118 43.2
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 1.3e-12 77.0 120 45.0
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 1.3e-12 77.0 120 45.0
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 1.3e-12 77.0 120 45.0
MD10G1005600 Malus domestica HOM05D000921 ORTHO05D002852 1.3e-12 77.0 110 50.9
Sc02g0002400 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.3e-12 77.0 130 45.4
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 2.2e-12 76.3 120 44.2
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.2e-12 76.3 110 46.4
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 2.9e-12 75.9 120 44.2
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 2.9e-12 75.9 120 44.2
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 3.8e-12 75.5 113 44.2
AagrBONN_evm.TU.Sc2ySwM_117.767 Anthoceros agrestis HOM05D000921 ORTHO05D002852 8.5e-12 74.3 65 63.1
AT3G60920 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 8.5e-12 74.3 118 42.4
TPR.G28298 Trifolium pratense HOM05D000921 ORTHO05D002852 8.5e-12 74.3 60 68.3
AagrBONN_evm.TU.Sc2ySwM_368.3442 Anthoceros agrestis HOM05D000921 ORTHO05D002852 1.1e-11 73.9 65 61.5
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 1.5e-11 73.6 89 56.2
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 3.2e-11 72.4 68 60.3
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 4.2e-11 72.0 120 43.3
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 4.2e-11 72.0 97 49.5
Mapoly0056s0137 Marchantia polymorpha HOM05D000921 ORTHO05D002852 5.5e-11 71.6 56 67.9
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 7.2e-11 71.2 118 41.5
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 8.0e-10 67.8 100 49.0
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 1.0e-09 67.4 68 60.3
CBR_g26196 Chara braunii HOM05D000921 ORTHO05D002852 4.0e-09 65.5 72 51.4
Zm00001eb296030 Zea mays HOM05D049037 ORTHO05D444379 4.0e-09 65.5 97 51.5
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 1.2e-08 63.9 91 48.4
arahy.Tifrunner.gnm1.ann1.JZMQ8V Arachis hypogaea HOM05D000921 ORTHO05D002852 5.7e-08 61.6 50 68.0
arahy.Tifrunner.gnm1.ann1.P2FPY5 Arachis hypogaea HOM05D000921 ORTHO05D002852 9.7e-08 60.8 48 68.8
Lj9A573G74 Lonicera japonica HOM05D000921 ORTHO05D002852 4.1e-06 55.5 99 40.4


User provided reference genes

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